Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271928g00014 ATGAAGAGATCACTTTTTTCTTCCTCTTACATGTTTCCTGCAACAATCCTTCTTGTTTTGCTGATTATGATAACAAGTACTTCTGCACAGCTAGTAAGAAGTGAGAACACAATCCTCTTCCAAGTTCAGAAGCTTCTAGAATATCCACAAGCTCTGCAAGGATGGAATAACTGGACCAACTTCTGCTACCTCCCTCCATCACCTTCCCTCACTGTAGTCTGCACAAATGGCCATGTCACAGAACTCACCATCATTGGAAACAAGACTAGTTCTCATCAAACACTTTCATCAAGGTTCTCCATTGATTCTCTCTTCACTGTGATGACAAAGTTATCAAATTTGAAGGCCTTATCATTGGTTTCACTAGGTTTGTGGGGTCCATTACCTTCCAAAATCAACAGGTTCTGGTCTCTTGAGGTTCTCAACATTAGTTCAAATTTCATTTATGGTGAAATCCCACCATCAATATCAACATTGAAGAGCCTCAAGAGTCTTGTTTTGGCTGATAATCTCTTCAATGGAACTGTCCCAGATCTCAAAAAGCTAACTTCTCTTCAAGAGCTTAACTTGGGTGGCAACAAGCTTGGTCCTGATTTTCCTTCACTATTAGGCCAGAACCTTGTTACTGTTATCTTGAAGAACAATTCTCTGAGATCTCAGATTCCTCTTCAACTCATAAAATTTGATAAGCTTCAGATACTTGACATCTCTTCCAATGAAATATTTGGAAAGATTCCATCTTTTCTTTTCTCTTTGCATTCTCTCCAGTACCTCAACTTGGCTGCAAACCAATTTAGTGGTAACCTTTCTGCAAAAACAACATGTGGTTCTGCACTAACATATGTGGATATCTCACACAATCTTCTATTTGGAAAGTTGCCATCATGCATTGGTTCACTGATTTCAAAGGGCAAGGTGCTATACTCTGGGAATTGTTTTTCAACAAGAAGGTTGAATGACCAGCAGCATCCATATTCATATTGCAAGAAGGAGGTTGCCTTAGCTGTCAAGCCTCCAGCGAAAACAAAGAAGGAAAATGAATCCAGAGTGAAACTAGGCCTATTACTTGGTATAATTGGAGGTACTGTAGGAATTGCAGCAGTTATGGTTCTACTCACTGTCTTCATTGTGAAGAAATCCAATGAAGATAGATCATACCGTCACCGGGACAGATCAGTTGCTGATAAATTTTACGCCCGAGCATCTCCCGGACCAAACACTGATACAAGACGTGTTCCTCAAACCATGAGGCTATCTGCAGTTGGATTGCCACCATACCGTAGTTTCACACTAGAAGAAATTGAAGATGCAACAAACAACTTTGACCCAACAAATCTAGTAGGAGAAGGAACACAGGGCCAGCTATATAGAGGTTGGCTCAGAGATGGTGCAGTGGTCCTGGTTAACTGTGTAAAAATAAAGCAGAAGGGTTTGCCCCACAGCATTAACCAGAACATAGAGGTGTTGCCTAATTTGAGGCACAGGCATCTGATGAGTGTTGTAGGACACTGTGTCATTACTCATCAGGAAAATCCTCAACCAACAAGCACAGTCTTCATTGTATTTGAACACATATCAAATGTGTCACTAAGAGATCAACTTACAGATTGGAGAAAGAGAGATATGCTGAAATGGCCACAAAGAATGGCAATCAGCATTGGCATTGCAAGAGGGGTGCAATTCTTGCACACAGGAGTTGCTCCTGCCATTTTCGGCAACAATTTGAAGATTGAGAACATTCTATTGGATGATAGCCTCAATGCAAAAGTTAGCAGATACAGCATTCCATTGCCATCCAAGAACACTGAACAAAATGCTCCCAATCAGATTGGCAGCACCAATAATGCAGAAAAGGAAGATATCTATCAGTTGGGTGTTATTCTTCTTGAAGTTATCACTGGCAAACAAATTGAATCTTCCAGTGAAATAGAGGAGCTGAAGGATGNNNNNNNNNNTCACTTAACCTCCAATAAAAATGTTAGGAATCATAGAAGTATTTACTCTACATAA 2010 0.401 MKRSLFSSSYMFPATILLVLLIMITSTSAQLVRSENTILFQVQKLLEYPQALQGWNNWTNFCYLPPSPSLTVVCTNGHVTELTIIGNKTSSHQTLSSRFSIDSLFTVMTKLSNLKALSLVSLGLWGPLPSKINRFWSLEVLNISSNFIYGEIPPSISTLKSLKSLVLADNLFNGTVPDLKKLTSLQELNLGGNKLGPDFPSLLGQNLVTVILKNNSLRSQIPLQLIKFDKLQILDISSNEIFGKIPSFLFSLHSLQYLNLAANQFSGNLSAKTTCGSALTYVDISHNLLFGKLPSCIGSLISKGKVLYSGNCFSTRRLNDQQHPYSYCKKEVALAVKPPAKTKKENESRVKLGLLLGIIGGTVGIAAVMVLLTVFIVKKSNEDRSYRHRDRSVADKFYARASPGPNTDTRRVPQTMRLSAVGLPPYRSFTLEEIEDATNNFDPTNLVGEGTQGQLYRGWLRDGAVVLVNCVKIKQKGLPHSINQNIEVLPNLRHRHLMSVVGHCVITHQENPQPTSTVFIVFEHISNVSLRDQLTDWRKRDMLKWPQRMAISIGIARGVQFLHTGVAPAIFGNNLKIENILLDDSLNAKVSRYSIPLPSKNTEQNAPNQIGSTNNAEKEDIYQLGVILLEVITGKQIESSSEIEELKDXXXXHLTSNKNVRNHRSIYST 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271928g00014 669 ProSiteProfiles Protein kinase domain profile. 441 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271928g00014 669 SMART serkin_6 441 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271928g00014 669 SUPERFAMILY Protein kinase-like (PK-like) 419 645 IPR011009 -
Stsc271928g00014 669 Gene3D Phosphorylase Kinase; domain 1 414 511 - -
Stsc271928g00014 669 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 91 636 - -
Stsc271928g00014 669 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 414 514 - -
Stsc271928g00014 669 SUPERFAMILY L domain-like 51 312 - -
Stsc271928g00014 669 Gene3D Transferase(Phosphotransferase) domain 1 526 667 - -
Stsc271928g00014 669 Gene3D Ribonuclease Inhibitor 32 330 IPR032675 -
Stsc271928g00014 669 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 32 204 - -
Stsc271928g00014 669 Pfam Leucine Rich Repeat 230 249 IPR001611 GO:0005515
Stsc271928g00014 669 Pfam Leucine Rich Repeat 137 158 IPR001611 GO:0005515
Stsc271928g00014 669 Pfam Leucine Rich Repeat 279 300 IPR001611 GO:0005515
Stsc271928g00014 669 Pfam Protein kinase domain 445 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271928g00014 Stsc-Chr271928 136433 139673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271928g00014 27 647 Miscellaneous Gene Families AT2G02780 51.477 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Stsc271928g00014 PK_Tyr_Ser-Thr 3.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271928g00014 - - gmx:100789785 921.383