Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271928g00013 ATGGGAAGACAAAGTGCAGGAAAATGGATCAGGAACTTAATTCTGGGCAAGAAATCATCATCAAAGTCTGATTCATCAAAAAACCAAGATATTCTTAAAGCTTCAAGTAACAAGGATGTGGTGATGGTGGTGGTTTCTTCTGAGGCACCAATGTCTCATCCAAATCTAATTGTGACAACAGTCCCTCCAAGTTCTTCAGCTAAAATCGTAACAAAAGGAACAGTATCAGAAAATGAGGTAGTTAATGGATCATCAATTGAAAACGTTGTTGTTATTGCAAATGAAGATGGAAAGGCCAATGCAGAAGCACAAGATGCTGCTGCTAATGATGGATCTGAGAATCATGTTGAGAAAATCAACCTTACAGATGCAGCTATAATAGTTCAAGCAGCCCTTAGAGGCTATCAGGCACGCAGAAAGTTTAAGATGCTGAAAGGATTCATACCCCTTCAAGGTCTTATTCGTGGCAAGTTGGGTAGAACAGAAGCTGTTTCTGCTCTATACTGTGTTAATGGAATAGTTAAAGTTCAAGCACTCGCTCGAGGTTACAGAGTTAGGCACTCTGCTGCTATTGGTCTTCAAATGCAGAAATCTTTTAACCAACTTCTTGGGGGAGTTGCATCCACAAAGCCACAGAAGATTTCAGATAGTGTCTTTGTTCAAAAGCTTCTGGCATCGTCGCCCGCCGTGCTTTCTCGAAAACTCAACTATGAATGGCTTGAACGTTGGACAAGATCACGATTTTGGGCACCTCTTCCAGAATTGAAGAAAATTGATGAATCATTGTCTGATGAGAGAAATGTTTTAGGCCAAAGAGTTGAATGTGATGAGGGAAAAGGCAAAAGAAATGCAAGGAAAGGAGAAGCTGTTGATGATGGTTTGATTCTGAAAAAGGAATCAAGCATGGCATTGCATTCATCAGCTAAGGAAAATGAGAAAAGAAAACAAGACATGACAAGAAAAAGTTCAGATCATGCTAAAAAGTTAGCAGTATCAAAGTCAAAAGAATCTGATGTTGAAAATCATAGTAATAATTTCCAGAGAAGAGCTTCACTGCCTGCTAATTATTTCAAGAATAATGAGTCACCAGAAAAGACTAATACTCCTCCAAGAAGAGTTCCAAGTTATATGGCTCCTACTGAGTCTGCAAAGGCTAAGCTAAGAGGACAAGAGTCTCCAAGATTTGGTAGTGATTTGGTGTTTGAAAGAAATGGTATAAACAGGAGGCTGTCGCTTTCATGTTCACTTAATGGCAAGTTAGGTTTGGTTTCTCCAAGATCAGCAAGATTTGGGAACATTGCAAGCAGCAAAGGAATGCCAAAGGCAGATAACAGATCCCTTTCAACTTCAGTTTCAGATAAGTTGATCCAACCTCAACCTCAGTGGAGAAGATACGTTGGGAAAGAGGATCGAATTCGAGACTTCTATCAGAGAAATGAGACATATACCATTAGGGATGACAATCTGACATGCCCGTCCAAACCTGTCCCACCTGAATGGGGCGGTTGTGTAGGTATGGGGCGGATAAATAAAAGTTTAGATGAATTGGGTTCGGAATCTCACCAAGGTCAGGGCAGGCCCCACGGTTCTATGAGCGCTTATAGAGGTACTTACAGATCGCCTACTAATAAGGTTCTCACATCGACAGTGGGGTTCGAACTCACGACCTTGTGGGTTATGAGCTGA 1686 0.4104 MGRQSAGKWIRNLILGKKSSSKSDSSKNQDILKASSNKDVVMVVVSSEAPMSHPNLIVTTVPPSSSAKIVTKGTVSENEVVNGSSIENVVVIANEDGKANAEAQDAAANDGSENHVEKINLTDAAIIVQAALRGYQARRKFKMLKGFIPLQGLIRGKLGRTEAVSALYCVNGIVKVQALARGYRVRHSAAIGLQMQKSFNQLLGGVASTKPQKISDSVFVQKLLASSPAVLSRKLNYEWLERWTRSRFWAPLPELKKIDESLSDERNVLGQRVECDEGKGKRNARKGEAVDDGLILKKESSMALHSSAKENEKRKQDMTRKSSDHAKKLAVSKSKESDVENHSNNFQRRASLPANYFKNNESPEKTNTPPRRVPSYMAPTESAKAKLRGQESPRFGSDLVFERNGINRRLSLSCSLNGKLGLVSPRSARFGNIASSKGMPKADNRSLSTSVSDKLIQPQPQWRRYVGKEDRIRDFYQRNETYTIRDDNLTCPSKPVPPEWGGCVGMGRINKSLDELGSESHQGQGRPHGSMSAYRGTYRSPTNKVLTSTVGFELTTLWVMS 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271928g00013 561 MobiDBLite consensus disorder prediction 439 454 - -
Stsc271928g00013 561 Pfam Protein of unknown function (DUF4005) 361 427 IPR025064 -
Stsc271928g00013 561 Gene3D - 120 197 - -
Stsc271928g00013 561 PANTHER IQ-DOMAIN 5-RELATED 1 418 - -
Stsc271928g00013 561 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Stsc271928g00013 561 MobiDBLite consensus disorder prediction 344 369 - -
Stsc271928g00013 561 ProSiteProfiles IQ motif profile. 171 198 IPR000048 GO:0005515
Stsc271928g00013 561 MobiDBLite consensus disorder prediction 292 390 - -
Stsc271928g00013 561 MobiDBLite consensus disorder prediction 434 454 - -
Stsc271928g00013 561 SMART iq_5 120 142 IPR000048 GO:0005515
Stsc271928g00013 561 SMART iq_5 168 190 IPR000048 GO:0005515
Stsc271928g00013 561 MobiDBLite consensus disorder prediction 303 343 - -
Stsc271928g00013 561 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271928g00013 Stsc-Chr271928 128029 133691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271928g00013 280 464 IQD Protein Family AT1G14380 33.161 1.11e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271928g00013 - - aip:107634789 518.85