Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271928g00011 ATGTTTATAAGGGATNNNNNNNNNNATTTTACAGCTTCCAAACCAGGATCAGGAATGGTTGTTGCTGTGAAGAAACTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAAGTTAACTACCTGGGACAACTTCACCATCAAAATCTGGTTAAACTAATTGGCTACTGTGTGGAGGGAGAAGATCGGCTATTGGTGTATGAGTTCATGCCCAAAGGAAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAGCCGCTTTCTTGGTCACTGAGGATGAAAGTGGCCATTGGTGCTGCCAGAGGACTAACTTTTCTTCACAATGCCAAATCACAAGTCATATACCGTGATTTCAAAGCTTCTAATATCCTACTAGATGCTGAGTTCAATGCAAAACTCTCTGATTTTGGCTTAGCAAAGGCTGGTCCTACTGGTGATAGAACTCACGTCTCTACTGAAGTTATGGGTACTCGTGGATATGCAGCACCTGAATATGTAGCAACAGGGCGGCTAACGGCCAAAAGTGATGTATATAGCTTTGGGGTTGTGTTGCTTGAGCTTTTGTCCGGAAGACGTGCTGTTGATAGAACAAAAGCTGGTGTAGAGCAGGACCTTGTAGACTGGGCGAAACCATACTTAGGTGACAAAAGAAGACTATTTCGGATCATGGACACCAAGCTTGAGGGCCAATACCCACAGAAAGGAGCCTACATGGCTGCTACTCTTGCTTTAAAATGCCTTGATCGTGAACCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGAAACCCTTGAGCAGATAGAAGTCCCCAAAACTGCAGCTCGAAACTCCCAATCAGGGCAGAAGAGAGTACATGTTCCTCCAAGCCCAAGGAAGTCTCCTGCACAGAATGCGTCCCCTATGAACGTTACTCGAACTTCATACCCATTGCCGCCTTGCCGAGAATCTCCTCATGTACACTAA 969 0.4489 MFIRDXXXXFTASKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLHHQNLVKLIGYCVEGEDRLLVYEFMPKGSLENHLFRRGPQPLSWSLRMKVAIGAARGLTFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTEVMGTRGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGVEQDLVDWAKPYLGDKRRLFRIMDTKLEGQYPQKGAYMAATLALKCLDREPKARPPMTEVLETLEQIEVPKTAARNSQSGQKRVHVPPSPRKSPAQNASPMNVTRTSYPLPPCRESPHVH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271928g00011 322 Gene3D Transferase(Phosphotransferase) domain 1 73 289 - -
Stsc271928g00011 322 FunFam Probable serine/threonine-protein kinase PBL8 72 285 - -
Stsc271928g00011 322 MobiDBLite consensus disorder prediction 271 322 - -
Stsc271928g00011 322 CDD STKc_IRAK 17 269 - -
Stsc271928g00011 322 PANTHER OS01G0588500 PROTEIN-RELATED 12 270 - -
Stsc271928g00011 322 SUPERFAMILY Protein kinase-like (PK-like) 16 266 IPR011009 -
Stsc271928g00011 322 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271928g00011 322 Pfam Protein tyrosine and serine/threonine kinase 14 266 IPR001245 GO:0004672|GO:0006468
Stsc271928g00011 322 MobiDBLite consensus disorder prediction 272 286 - -
Stsc271928g00011 322 Gene3D Phosphorylase Kinase; domain 1 11 72 - -
Stsc271928g00011 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 115 127 IPR008271 GO:0004672|GO:0006468
Stsc271928g00011 322 PIRSF TyrPK_CSF1-R 10 93 - -
Stsc271928g00011 322 PIRSF TyrPK_CSF1-R 233 314 - -
Stsc271928g00011 322 PIRSF TyrPK_CSF1-R 86 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271928g00011 Stsc-Chr271928 117935 120371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271928g00011 17 266 Glycoside Hydrolase AT3G07070 56.126 8.56e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc271928g00011 PK_Tyr_Ser-Thr 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271928g00011 - - gmx:100809778 537.724