Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271928g00010 ATGAAGAAACAGCAAGAACAGTGTGATAGAGAATCTAAGAAGAAGGGTCACATTGTAACTTGGACTCAACAGGAAGATGATATACTGAGAGAGCAGATTGGTATCCATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGTAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAAGATTTGGCAACAGATGGACAGAAATAGCAAAAGTGGTTTCAGGAAGAACGGATAATGCTGTGAAAAATCGCTTCTCCACTCTCTGCAGAAAGAGGCAAAAATATGAAGCTTTAGCGAAAGAGAACAGCATTTCATCACATATCAATTCAAATAACAATAAAATTGTTTTCCAACATGCTTATAACACAGATGCAACACCAGAATCTGCTGTATCTATAAAGAAAATGAGGAGGACTCATATCACTGATGATGGAGGGAAGATCAAGTTTGGGGATAGATCACATTTGCGGAATGGAACTTTCATAAATCAACCTCCAAGGACACCATTTGCAGTATTAGCTCAAAACTCACAAAACATAAACAACTTGCTAGATGAGCTTCAAGTTTGCAATGCCAAGTTTAGTAGTTCTGTTCAAAATAATAAGACTCAAGGTACATTTCTAAAACGGGACGACCCAAAAATAGGTGCATTGATGCAACAAGCAGAGTTGCTTAGCTCACTAGCTCAAAATATTGACAAAGAGGACATGGACCGAAGTCTTGAAAACACGTGGAAGGTTCTTCAAGAGTTTTTGAACAGAACCAAAGAATCAAACAACCCTAAATGCAAGATTCAAGGTTTACAGCTCGCTGATCTTAAAAATATGGTTGAGGATTTGAGAAGTAGTAATAAGAGAGGCCAGCCATGTTGGAGGCAAATGGATCTGTATGAAGACTCTCCAGCCAGTTCCGAATACAGCACAGGATCAACTATCCTCCCTCTCTCAGCTGGTGACAATATGGAACAGTCATCACTTCGGGATAAAGAAACTGAAGTGAAAACCACACAAATTGAAGATAAGAAAGAAGATGGATATGAGAGAGGTGGTCTAGTTACTGCAACTGTGGATCAAGGAGATATGTTGCCGAATTCGGAAGAACGGATAACCAATGATGGTGCTGTTTCTGCCTCATCAAGAGTGGAGTTTGGTTCCCCTCTTCAAGTAACTCCTATATTCAGATCTTTGGCTGCAGGGATTCCCAGCCCAGAATTTTCGGAAAGTGAAAGGAACTTCTTAAGGAAAACACTAGGAGTGGAGTCTCCATCTCTCAACCCAAGTGCTCAACCGTCACAGCCGCCACCCTGCAAAAGAGCCCTGCTAGACAGTTTACAATCCTAG 1419 0.4059 MKKQQEQCDRESKKKGHIVTWTQQEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKRFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKRQKYEALAKENSISSHINSNNNKIVFQHAYNTDATPESAVSIKKMRRTHITDDGGKIKFGDRSHLRNGTFINQPPRTPFAVLAQNSQNINNLLDELQVCNAKFSSSVQNNKTQGTFLKRDDPKIGALMQQAELLSSLAQNIDKEDMDRSLENTWKVLQEFLNRTKESNNPKCKIQGLQLADLKNMVEDLRSSNKRGQPCWRQMDLYEDSPASSEYSTGSTILPLSAGDNMEQSSLRDKETEVKTTQIEDKKEDGYERGGLVTATVDQGDMLPNSEERITNDGAVSASSRVEFGSPLQVTPIFRSLAAGIPSPEFSESERNFLRKTLGVESPSLNPSAQPSQPPPCKRALLDSLQS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271928g00010 472 ProSiteProfiles Myb-like domain profile. 21 64 IPR001005 -
Stsc271928g00010 472 MobiDBLite consensus disorder prediction 326 364 - -
Stsc271928g00010 472 SUPERFAMILY Homeodomain-like 20 111 IPR009057 -
Stsc271928g00010 472 MobiDBLite consensus disorder prediction 349 364 - -
Stsc271928g00010 472 CDD SANT 73 114 IPR001005 -
Stsc271928g00010 472 Gene3D - 7 69 - -
Stsc271928g00010 472 Coils Coil 199 219 - -
Stsc271928g00010 472 FunFam Transcription factor MYB124 13 69 - -
Stsc271928g00010 472 Gene3D - 72 142 - -
Stsc271928g00010 472 MobiDBLite consensus disorder prediction 326 348 - -
Stsc271928g00010 472 Pfam Myb-like DNA-binding domain 21 81 - -
Stsc271928g00010 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Stsc271928g00010 472 PANTHER MYB PROTEIN-RELATED 20 155 - -
Stsc271928g00010 472 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Stsc271928g00010 472 CDD SANT 20 64 IPR001005 -
Stsc271928g00010 472 SMART sant 17 66 IPR001005 -
Stsc271928g00010 472 SMART sant 69 117 IPR001005 -
Stsc271928g00010 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271928g00010 Stsc-Chr271928 107118 111619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271928g00010 59 470 MYB Transcription Factor Family AT1G14350 49.880 2.27e-124 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc271928g00010 Myb_DNA-bind_6 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271928g00010 K09422 - gmx:100807667 640.188