Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271928g00009 ATGGCTTTCTTTCCAGCAAATTTCATGTTACAAACCACACATCATCATCACCAAGATGAACATCAACCTCCACCTTCACTCAACTCAATCCTAACTTCATGTGCACCTCAAGAATACCATGGAGGAGGAGGATCATTTTTAGGAAAGAGATCGATGTCCTTCTCCGGGATCGAGCTTGGAGAAGTAGAAGCAAACGGCGGAGAAGAAGAGCTTTCGGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGACTCTCGAGAAGAGCTTCGAGTTAGGGAACAAGCTTGAACCCGAGAGGAAAATGCAGCTTGCAAGAGCTCTCGGCCTTCAACCCAGACAGATTGCAATTTGGTTCCAAAACAGAAGAGCTAGATGGAAGACAAAGCAATTAGAGAAAGATTATGATCTTCTTAAGCGACAATTTGAAGCTCTTAAGGCTGATAATGATGCTCTTCAAGCTCAGAATCACAAACTTCATACTCAGATAATGGCATTGAAAAATAGAGAACCAACAGAATCAATAAACCTAAACAAAGAGACAGAGGGATCAAGCAGCAACAGGAGTGAGAACAGCTCAGAAATCAAGTTGGATATATCAACAAGGACACCAAATTCAGCCATTGACAGCCCTCTATCAACTCATCATCATAATCAGAACACAAACAACAATAACAGCAGAACACTGTTTCCATCACCATCAAATGCTGCTGCTGCTAGGCCAACAGAAGTTGCACAGCTTTTCCAAACCACTCCACAACAACATCATCATCATCATCATCACATGGTCAAAGAAGAGAGCTTGAGCAACATGTTCTGTGCCATTGAAGACCAATCTGGCCTCTGGCCATGGTTAGAGCATCAAAATTTCAATTGA 897 0.4292 MAFFPANFMLQTTHHHHQDEHQPPPSLNSILTSCAPQEYHGGGGSFLGKRSMSFSGIELGEVEANGGEEELSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEALKADNDALQAQNHKLHTQIMALKNREPTESINLNKETEGSSSNRSENSSEIKLDISTRTPNSAIDSPLSTHHHNQNTNNNNSRTLFPSPSNAAAARPTEVAQLFQTTPQQHHHHHHHMVKEESLSNMFCAIEDQSGLWPWLEHQNFN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271928g00009 298 Gene3D - 73 142 - -
Stsc271928g00009 298 SMART HOX_1 79 140 IPR001356 GO:0003677
Stsc271928g00009 298 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Stsc271928g00009 298 MobiDBLite consensus disorder prediction 63 83 - -
Stsc271928g00009 298 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Stsc271928g00009 298 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Stsc271928g00009 298 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Stsc271928g00009 298 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Stsc271928g00009 298 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Stsc271928g00009 298 Coils Coil 128 176 - -
Stsc271928g00009 298 CDD homeodomain 81 137 IPR001356 GO:0003677
Stsc271928g00009 298 MobiDBLite consensus disorder prediction 173 242 - -
Stsc271928g00009 298 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Stsc271928g00009 298 SUPERFAMILY Homeodomain-like 73 138 IPR009057 -
Stsc271928g00009 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 262 IPR045224 GO:0003700
Stsc271928g00009 298 MobiDBLite consensus disorder prediction 173 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271928g00009 Stsc-Chr271928 96183 97960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271928g00009 1 298 Homeobox Transcription Factor Family AT1G69780 61.513 1.27e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc271928g00009 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271928g00009 K09338 - gmx:100790840 439.499