Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271928g00006 ATGTCGAGCAGAAGATCTTCTTCGCGTTCGAGTAGGCAATCATCAGCTGCTCCAACTTCCGCCGCCGGGATGACAGATGCTCAAATAACCGATCTCGTCTCCAAGTTGCAACAACTCATCCCTCAGCTACGCTCTACGCATTCCGACAAGGTTTCTGCTGCGAAGGTTTTACAAGAGACTTGTAGCTACATAAAAAGCTTGCATAGAGAGGTTGATGATCTCAGTGACCGATTGTCCGAGCTTTTGGCCAACACAGACTCAAATAGCGCACAAGCAGCCATTATTAGGAGCTTACTTATGTAA 303 0.4719 MSSRRSSSRSSRQSSAAPTSAAGMTDAQITDLVSKLQQLIPQLRSTHSDKVSAAKVLQETCSYIKSLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271928g00006 100 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 89 IPR036638 GO:0046983
Stsc271928g00006 100 CDD bHLH_AtPRE_like 25 84 - -
Stsc271928g00006 100 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 67 IPR011598 GO:0046983
Stsc271928g00006 100 Gene3D - 27 96 IPR036638 GO:0046983
Stsc271928g00006 100 PANTHER TRANSCRIPTION FACTOR PRE 1 100 IPR044293 GO:0006355|GO:0040008|GO:0046983
Stsc271928g00006 100 Pfam Helix-loop-helix DNA-binding domain 28 68 IPR011598 GO:0046983
Stsc271928g00006 100 Coils Coil 64 84 - -
Stsc271928g00006 100 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271928g00006 Stsc-Chr271928 76468 77269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271928g00006 24 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 70.130 2.01e-31 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271928g00006 HLH 7.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271928g00006 - - gmx:100804830 137.887