Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271928g00002 ATGAGTGAGAAAACGATCATGGAGGATCAAAATGGGATCCGCAATAGACCTAATTTCCCACTCCAACTCTTACACGATAACAATAACAAACACCATGATAATCTTCAACAGTCTCCTCAACATCATGCACCCGCCGCCGCCGCCGCTCCTCCCAAGAAGCTCCCGCCCAAGCGACCTTCCACTAAAGACAGGCACACCAAGGTCGACGGTCGCGGCCGACGCATCCGTATGCCCGCCGCCGCCGCTGCCAGGGTCTTCCAGCTCACAAGGGAGCTCGGCCACAAGTCTGACGGCGAGACCATAGAGTGGCTCCTCCAGCAGGCTGAGCCCTCCGTTATCGCCGCCACCGGAACCGGTACCATCCCTGCAAACTTTACTTCACTCAACATCACGCTTCGGAGCTCGGGATCCACCCTATCTTCCCCCTCTCACTACTTCAGAGGAGCCACCGCCACTGCTACACCGTATCTCAGCCACGCAGCCAGCTTCTCCGCCGCCAGGAGCCGCAGTGAGTGGGTGAGGAACGTGGCGGTGGAAGATTATTCTAGAAGACTCATGTTCTCCGGTGGTGACAATAGTAATAGTAATAATAATAACAATTCTGCTTCTGCTACTAATACTGTTTTGAATTTCAACAACGTTGTTAATGATATTATGCAAAGCAAGGTAGAGGCTCGGGAAGTTTCCGGTAGTGGTGATGGTGCCGGCGAAGGGGAGGGTTTAGGAAGGAAGAGAAGGCAAGAAGAGGCGTTCTCACAGCACCAGGGTACTCAGATGATGGGTAGTTATTTGTTACAGTCCAGTTCGGGCTCAATTCCGGCCAGTCATGCTTCTATTCCGGCGACTTTTTGGATGATGGGAGGAGGTGGAGGTGGTGGTGGCAGCGGTGGCGGTGGCGGTGGTAATAGTGGCAGTGATCCAATTTGGGCAATTCCAACTGTTGGCAACAATAGTAGTATGTATAAAGGGGCTATCTCTGGTGTCGGCGGCGGCAACGGTGGTGGCGGCATTCATTTCATGAATTTTGGTTCTCCAATGGCTCTATTGCAAGCTCAACAACTAGGAAGCGGCGGCGGTGGCGGCGGCGGCGGCGCATTGCTTAGTGAAAGTAACCTGGGAATGCTTGCAGCACTTAATGCATATAGGCCTATTATGGCTAACAGCAGCGGTGGCGGTGGCGGCAGCGTTCCGGAGTCGCCTGGGAGTGGCGGGCAACATTCACAGCACGGAGGAGATGAAGAAGAAAGTCAACATTAG 1257 0.537 MSEKTIMEDQNGIRNRPNFPLQLLHDNNNKHHDNLQQSPQHHAPAAAAAPPKKLPPKRPSTKDRHTKVDGRGRRIRMPAAAAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNITLRSSGSTLSSPSHYFRGATATATPYLSHAASFSAARSRSEWVRNVAVEDYSRRLMFSGGDNSNSNNNNNSASATNTVLNFNNVVNDIMQSKVEAREVSGSGDGAGEGEGLGRKRRQEEAFSQHQGTQMMGSYLLQSSSGSIPASHASIPATFWMMGGGGGGGGSGGGGGGNSGSDPIWAIPTVGNNSSMYKGAISGVGGGNGGGGIHFMNFGSPMALLQAQQLGSGGGGGGGGALLSESNLGMLAALNAYRPIMANSSGGGGGSVPESPGSGGQHSQHGGDEEESQH 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271928g00002 418 ProSiteProfiles TCP domain profile. 61 115 IPR017887 -
Stsc271928g00002 418 Pfam TCP family transcription factor 60 199 IPR017887 -
Stsc271928g00002 418 MobiDBLite consensus disorder prediction 224 256 - -
Stsc271928g00002 418 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 40 396 IPR005333 GO:0003700
Stsc271928g00002 418 MobiDBLite consensus disorder prediction 1 25 - -
Stsc271928g00002 418 MobiDBLite consensus disorder prediction 1 73 - -
Stsc271928g00002 418 MobiDBLite consensus disorder prediction 386 418 - -
Stsc271928g00002 418 MobiDBLite consensus disorder prediction 392 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271928g00002 Stsc-Chr271928 16967 18659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271928g00002 35 353 TCP Transcription Factor Family AT3G47620 43.391 2.31e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc271928g00002 TCP 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271928g00002 - - aip:107633962 446.432