Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271927g00016 ATGCAACATAGGTTGAAGTTGCAGCAACAACAACAACAAGCCCTAATGCAACAAGCTTTGCTTCAACAACAACAGATGTACCACCCTGGCATGCTTGCTGCTGCAATGTCTCAGATGGAGCCAGTTCCAGGCGGAAATCTACCCCCTGGGTTTGACACTTCTTCATGCCGTAGTGTTTATGTAGGAAATATACATGTAAATGTCACGGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCTCTGGCTGGGTGCAAGCTTATTAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTATCATGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGAAGGCAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGAGAGGATACTTCAGGGCACTACAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCGACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGACGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCACAAAGTGCCATCAATGATATGACAGGTAAATGGCTGGGAAATAGGCAGATACGATGCAATTGGGCAACTAAGGGTGCCAGTACTAGCTCCAATGAAGAGAAGAGCACTGACAACCAAAATGCTGTTGTGCTTACAAATGGTTCTTCAGATGGAGGTCAAGATAACAGCAATGAGGATGCCCCTGAAAACAATCCCGCATACACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAGCTCCATTGTCAATTTCATGCACTGGGGGCTGGAGTTATTGAGGAGGTTCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGATGGCTAATGGAAGAATAGTTCGTGGGAAATCTATGAAGTGTTCATGGGGCAGCAAGCCAACTCCTCCTGGAACCGCTTCAAATCCTCTGCCGCCTCCTGCTCAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATTCTCCTGCTGAGTTGTTGGCGTATCAGCGCCAGCTGGCCTTGAGTCAAGCTGCTGTATCTGGCCTTTCAGGTCAAGCACTTCTGCAGATGTCTGGACAACATGGCCTAGCTCCTGCATCAATGGGCATAAACTCTGGGGGATCCCAAGCCATGTATGACGGATATGCTGGTAATTCATCAAGACAGCAGCTCATGTACTATCGTTAA 1311 0.4546 MQHRLKLQQQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPGGNLPPGFDTSSCRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGASTSSNEEKSTDNQNAVVLTNGSSDGGQDNSNEDAPENNPAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRIVRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSGGSQAMYDGYAGNSSRQQLMYYR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271927g00016 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
Stsc271927g00016 436 MobiDBLite consensus disorder prediction 220 262 - -
Stsc271927g00016 436 Gene3D - 2 139 IPR012677 -
Stsc271927g00016 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 338 IPR000504 GO:0003723
Stsc271927g00016 436 CDD RRM2_PUB1 141 220 - -
Stsc271927g00016 436 SUPERFAMILY RNA-binding domain, RBD 254 347 IPR035979 GO:0003676
Stsc271927g00016 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Stsc271927g00016 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
Stsc271927g00016 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 331 IPR000504 GO:0003723
Stsc271927g00016 436 FunFam Nucleolysin TIAR-like protein 1 140 - -
Stsc271927g00016 436 Gene3D - 242 342 IPR012677 -
Stsc271927g00016 436 SUPERFAMILY RNA-binding domain, RBD 136 246 IPR035979 GO:0003676
Stsc271927g00016 436 FunFam Nucleolysin TIAR-like protein 141 239 - -
Stsc271927g00016 436 FunFam Oligouridylate-binding protein 1C 241 342 - -
Stsc271927g00016 436 SUPERFAMILY RNA-binding domain, RBD 42 135 IPR035979 GO:0003676
Stsc271927g00016 436 SMART rrm1_1 265 334 IPR000504 GO:0003723
Stsc271927g00016 436 SMART rrm1_1 143 216 IPR000504 GO:0003723
Stsc271927g00016 436 SMART rrm1_1 58 127 IPR000504 GO:0003723
Stsc271927g00016 436 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 45 341 - -
Stsc271927g00016 436 Gene3D - 140 239 IPR012677 -
Stsc271927g00016 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271927g00016 Stsc-Chr271927 98768 105642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271927g00016 58 338 Eukaryotic Initiation Factors Gene Family AT2G23350 29.795 1.60e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271927g00016 K13201 - gmx:100777108 829.32