Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271927g00003 ATGTCTCAAGGCTATTACTCAGAGTCAATTCCTTCTTCTGATTCTGGATCTGATAATATTTCAGATGCTGCTTCAGCTGAGCTCAAGCTCTACAGAGCATTCATTTTCTCAGCACCAATCTTCTTCACTTTCATTCTTCTCTTCCTCTTTTATGTCTTCTATCTTCGACCCAGAAGGGTTGATTGGTCCTCCCTTAGGATGAGACCCTTTTCTTTTCCTCCTCCTCACTCTAACTCCACCACCATCTCCACGTGGGATGTTGGCTTGAAGAAAGAATTCAGAGAGATGCTCCCTATTATTGTCTACAAGGAAAGCTTCTCTGTCAAAGATACCCAATGCTCAGTGTGCCTTTTGGACTACCAAGCAGAGGATAGGCTTCAACAAATACCTGCATGTGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTTGCCAGCCACAGCACCTGCCCCCTCTGCCGCTTGTCCCTGCTAGCTTCAGCTAAATCTTCAACAGAGCCTTCCAACATGCAGGGGCCACAGAGCAATGAGGAGACACAGACCATAGAATCATCCGAGTTGAGATCTACTAGTCATGTAGAAACCACTGTCTCTCAGAATGTCTCAGGAGAGGTTGCAATTGCCGCTCACTGCATCGATGTTGAAGGACAAAATGAGCAAAACAATCAGTAG 675 0.4563 MSQGYYSESIPSSDSGSDNISDAASAELKLYRAFIFSAPIFFTFILLFLFYVFYLRPRRVDWSSLRMRPFSFPPPHSNSTTISTWDVGLKKEFREMLPIIVYKESFSVKDTQCSVCLLDYQAEDRLQQIPACGHTFHMSCIDLWLASHSTCPLCRLSLLASAKSSTEPSNMQGPQSNEETQTIESSELRSTSHVETTVSQNVSGEVAIAAHCIDVEGQNEQNNQ 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271927g00003 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 160 IPR013083 -
Stsc271927g00003 224 CDD RING-H2_EL5-like 112 155 - -
Stsc271927g00003 224 Pfam Ring finger domain 112 155 IPR001841 -
Stsc271927g00003 224 SUPERFAMILY RING/U-box 97 160 - -
Stsc271927g00003 224 PANTHER OS11G0150450 PROTEIN 41 200 - -
Stsc271927g00003 224 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Stsc271927g00003 224 MobiDBLite consensus disorder prediction 165 196 - -
Stsc271927g00003 224 FunFam RING-H2 finger protein ATL7 79 160 - -
Stsc271927g00003 224 SMART ring_2 113 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271927g00003 Stsc-Chr271927 15024 18754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271927g00003 25 186 C3H Transcription Factor Family AT4G10150 60.000 1.62e-65 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271927g00003 K19039 - gmx:100794211 267.7