Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271926g00030 ATGGAAGAGAAAGATGAAGACGAAGTTGTGTCGTGTTCTTCTTCTTCTTCTTCGGATGAGGAATACGAAGAATGTTCCTCTCCGGCAGACGACGACCAACGCAAATCGCAAAATGTGGATGCTCTCCTCAGGGGCAACCTCATCGTGAAGAGGCAGCCACTGCTTCCTCGGGTTCTATCAGTGGGAAAGGGAGGAGCAGGTGCTTGTAGAAAGCCCTTCAAACCTCCGTCGTCCAATCACACTTACGATAACGATAATGCGCTTGCCCGTCGCCTTTCCGCCCGGAAAAGGTTTGTCCCTTGGGGTTCTTCTGCTTGCTTCCCCCGACCCCCTCTCGTGGACTTGAATGCGAATGAAAATGCAAGCTGCATCGACAATGCCGAGCAGCCTCACGATAAAATCGAAGTTCCTTTGCCCCCTGGGATTGATCCTCTCATACTCTGGCACCCCCTTGACGAGAATCAAACTTCCAATTTAACCACCATCGCAGTTGACCCCTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGAGTTCAGTTCATGTTTGATTGTGTCTCAGGCCTGTGTAGTGCGGAGAATATAAATGGGTGCATTTTGGCTGATGATATGGGTTTGGGGAAGACATTGCAGTCAATTACATTACTATATACCCTAATTTGCCAAGGATTTGATGGGAATCCACTGGTTAGAAAGGCTATCATTGTAACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAGATCAAGAAGTGGATTGGAGAAAGAGTTCGTCTACTTGCTCTTTGTGAAAGCAGTAGAGAAGATGTTCTCTCTGGGATTGACATGTTTACAAGGCCCCGCAGCACTATACAGGCAAAATTTCCCCTCATTTTTTAA 882 0.4762 MEEKDEDEVVSCSSSSSSDEEYEECSSPADDDQRKSQNVDALLRGNLIVKRQPLLPRVLSVGKGGAGACRKPFKPPSSNHTYDNDNALARRLSARKRFVPWGSSACFPRPPLVDLNANENASCIDNAEQPHDKIEVPLPPGIDPLILWHPLDENQTSNLTTIAVDPLLVRFLRPHQREGVQFMFDCVSGLCSAENINGCILADDMGLGKTLQSITLLYTLICQGFDGNPLVRKAIIVTPTSLVSNWEAEIKKWIGERVRLLALCESSREDVLSGIDMFTRPRSTIQAKFPLIF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271926g00030 293 Gene3D - 147 292 IPR038718 -
Stsc271926g00030 293 MobiDBLite consensus disorder prediction 1 36 - -
Stsc271926g00030 293 Pfam SNF2-related domain 175 263 IPR000330 GO:0005524|GO:0140658
Stsc271926g00030 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 267 IPR027417 -
Stsc271926g00030 293 MobiDBLite consensus disorder prediction 64 84 - -
Stsc271926g00030 293 PANTHER SNF2/RAD54 FAMILY MEMBER 67 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271926g00030 Stsc-Chr271926 136912 138275 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc271926g00030 SNF2_N 1.2e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271926g00030 K10875 - qsu:112024447 355.14