Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271926g00029 ATGGCTGTGATTCTGAGTTTCTCGCTATACTTCCTGAATCAGGCATTGGCAGCTCTTCCATGTAAACGAAGAATTCTATTATCAGGAACTCCTTTGCAGAATGACTTGGAGGAATTCTTTTCAATGGTTAATTTTACTAATCCTGGAATACTCGGTGATGTTGCCAATTTTCGACGTTACTATGAGGCTCCAATCATCTGCGGAAGAGAACCTAATGCCACTACAGAAGAGAAGAAGCTAGGTGCTGAACGCTCTGCAGAATTAAGTGCCAAAGTAAATCAGTTCATATTAAGAAGAACTAATGCGTTATTATCGAATCACTTGCCACCCAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCCCTACAGTCTGACCTTTACAAACATTTTATACAATCCAAAAATGTTAGACGTGCAATTAATGAAGAACAGAAGCAGTCCAAGATCTTGGCCTACATAACAGCTCTCAAAAAGCTGTGCAATCATCCAAAGCTAATCTACGATACAATCAAAAGTGGTAGTCCCGGAAATTCAGGTTTTGAAGACTGCCTTCGATTCTTCCCGCCGCAAATCTTATCTGGAAGGTCTGGCTCACGGACAGGAGGGTATGGAGCTTGGGTTGAACTATCTGGGAAAATGCATGTCTTAGCAAGGTTACTTGCTCATTTGCGTCAGAGAACAAGTGATCGCATTGTTCTGGTGTCAAACTACACTCAGACTCTCGATCTTTTTGCGCAATTGTGTCGAGAACAAGGGTATCCTCACCTGAGGCTTGATGGCGCTACATCAATCAAAAAAAGGCAGAAGTTGGTCAACTTCTTTAATGACCCATCTAAGGACGAATTTGTTTTTCTGTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCCGACTGGAACCCGGCAAATGATAAACAAGCTGCAGCAAGAGTCTGGAGGGATGGACAGAAGAAAAGAGTATATATTTATAGATTTTTGAGTACAGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCGAAAGAAGGATTGCAGAAGGTCATTCAGAAGGAGCAAACTGATGATAGCCTAGTGGCACAGGGTAACTTCTTTTCAACAGAGGATCTTCGCAATTTGTTCTCCTTTCAAGAGAATGCCAAGTCAGAGATTCATGAACAGATGTGTTGCACTCGATGTCAAACAAGTGATACACCTCAAACCACTGAAAAGGAATATGCAGCCCCTGATGGTGAATCTGATGAAGAAACCTCTGACATAGGTGGGTTTGCCAAAATTGCTGGCTGCTTAGAGAAGTTAACAAGGTCAGAAAAGCAGGTAGGGACACCATTAGAAGAAGATTTACGCAGTTGGGGCCATCACTTTTCCCCAGCTTCTGTACCGGATGCCATCCTTCAGGCTTCAGCCGGTGATGAGGTGACCTTTGTGTTCACAAATCAAGTTAATGGACGGCTGGTACCTATTGAATCTACAAGTAGTTCGGCACCGCAGCAAAAGGAAGTTAATAAGGAAATACCCAAGTTAAAGCTCCGGTTCAAACAAAAGCCCGCTATTTTCTCTGAGCATAATGATAAATCGCCACTGCGGGTGGGGAAGAGACCTTACAGGTAG 1647 0.4299 MAVILSFSLYFLNQALAALPCKRRILLSGTPLQNDLEEFFSMVNFTNPGILGDVANFRRYYEAPIICGREPNATTEEKKLGAERSAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVRRAINEEQKQSKILAYITALKKLCNHPKLIYDTIKSGSPGNSGFEDCLRFFPPQILSGRSGSRTGGYGAWVELSGKMHVLARLLAHLRQRTSDRIVLVSNYTQTLDLFAQLCREQGYPHLRLDGATSIKKRQKLVNFFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQKEQTDDSLVAQGNFFSTEDLRNLFSFQENAKSEIHEQMCCTRCQTSDTPQTTEKEYAAPDGESDEETSDIGGFAKIAGCLEKLTRSEKQVGTPLEEDLRSWGHHFSPASVPDAILQASAGDEVTFVFTNQVNGRLVPIESTSSSAPQQKEVNKEIPKLKLRFKQKPAIFSEHNDKSPLRVGKRPYR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271926g00029 548 Gene3D - 99 412 IPR027417 -
Stsc271926g00029 548 CDD SF2_C_SNF 210 338 - -
Stsc271926g00029 548 FunFam DNA repair and recombination protein RAD54-like 204 378 - -
Stsc271926g00029 548 MobiDBLite consensus disorder prediction 408 430 - -
Stsc271926g00029 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 491 IPR027417 -
Stsc271926g00029 548 Pfam SNF2-related domain 13 167 IPR000330 GO:0005524|GO:0140658
Stsc271926g00029 548 Gene3D - 121 391 - -
Stsc271926g00029 548 SMART helicmild6 243 327 IPR001650 -
Stsc271926g00029 548 FunFam Predicted protein 121 195 - -
Stsc271926g00029 548 MobiDBLite consensus disorder prediction 528 548 - -
Stsc271926g00029 548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 374 IPR001650 -
Stsc271926g00029 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 99 IPR027417 -
Stsc271926g00029 548 Pfam Helicase conserved C-terminal domain 218 326 IPR001650 -
Stsc271926g00029 548 Gene3D - 11 98 IPR038718 -
Stsc271926g00029 548 PANTHER SNF2/RAD54 FAMILY MEMBER 13 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271926g00029 Stsc-Chr271926 130476 136688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271926g00029 207 386 RAD5 or RAD16-like Gene Family AT5G43530 35.912 2.16e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc271926g00029 SNF2_N 1.2e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271926g00029 K10875 - gmx:100781631 887.1