Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271926g00024 ATGAATGAACAAAGGGTGCTAGCCACTATGAGGAACAACGGCACTGTCTTTGATGAAAACTCACATCAAGGTTCTGATAATATAAGACGGAATTCTCTTGTTCAACTATCTGCTTCTCCCCAATATGATTTGGAGAAGAGTTCTCAGGTTGGAGAAGCTTCCTGCCATATAAAAATTACTCAAGAGCCAGAGCCAGAACTGGCCTTTCGATATTTATCTCAGTCGCAAAGAAATTCTCAACCAGCCTTCCAAAATGTTCAAAGTGGATCCTTAGAAACAACTAACTCAATAAGTAGCATTTTTGTTGAGGATCGAATGCAACCGACTCCTGCAGAAAAGAACATGAGTTCAGTGATTGAACACTTGGATCTGCCTACTGGGGATGTTGCGGAAAATTATGGTCCTAACTGTTTGCAAAGAAAGTCTAAAAGGCTGACTCAAAGGAGGTTAAAGTCGGAGGACAACAGAACTTCAAAATTACTCAAGGGAAAATATACACTGAGGTCTTCGGGAAGCAGTGACAGGGCTTTGCAGCCGCAGACTCAAGAAAAATGTAAAGTGCCTGAACTAAGTAGTGATTTGGTTGATGTTAAACATGTTGGAGAGAAGAAGAGAAGAGGGAGGAAGAGAAAAGAGTGGGGAGGAGAGGGAGTTATTATTGATGAATTTTCGAGAATTAGGAGTCACTTACGATACTTACTGAACCGAGTAAGCTATGAGCAAAGCTTGATTGATGCTTATTCTGGACAGGGCTGGAAAGGATACAGCACTGAAAAACTGAAGCCTGAGAAGGAGCTTCAACGAGCTAAGTCTGAAATAGTTAAGCGTAAATTGAAAATTCGGGATCTATTTTGGAATTTGGGTTTATTATGCTCTGAAGGAAAGCTTCCAGAGTCTTTGTTTGATTCAGAAGGAGCAATACGCAGTGACGATATTTTCTGTGCAAAATGCGGGTCCAAAGAGCTGACCACCGATAATGATATAATTCTCTGTGATGGTGGTTGTGACCGTGGATTTCACCAGTGCTGTTTAAATCCTCCATTGTTAACTAAAGACAGTACGATACTAATTTTTTACTTTTTTATTTTTGTTTTGATTTTCCATCATTTAAATATATCCTTTTTTGGGTTACAGTTCCACCTGGCCATGAAATTTGGCTATGCCCGGGATGTAATTGCAAGCTTGAATGCATTAAACTTCTTAATGACTCCTTAG 1215 0.3984 MNEQRVLATMRNNGTVFDENSHQGSDNIRRNSLVQLSASPQYDLEKSSQVGEASCHIKITQEPEPELAFRYLSQSQRNSQPAFQNVQSGSLETTNSISSIFVEDRMQPTPAEKNMSSVIEHLDLPTGDVAENYGPNCLQRKSKRLTQRRLKSEDNRTSKLLKGKYTLRSSGSSDRALQPQTQEKCKVPELSSDLVDVKHVGEKKRRGRKRKEWGGEGVIIDEFSRIRSHLRYLLNRVSYEQSLIDAYSGQGWKGYSTEKLKPEKELQRAKSEIVKRKLKIRDLFWNLGLLCSEGKLPESLFDSEGAIRSDDIFCAKCGSKELTTDNDIILCDGGCDRGFHQCCLNPPLLTKDSTILIFYFFIFVLIFHHLNISFFGLQFHLAMKFGYARDVIASLNALNFLMTP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271926g00024 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 356 IPR013083 -
Stsc271926g00024 404 CDD PHD_PRHA_like 313 352 IPR045876 -
Stsc271926g00024 404 MobiDBLite consensus disorder prediction 162 183 - -
Stsc271926g00024 404 SUPERFAMILY FYVE/PHD zinc finger 306 350 IPR011011 -
Stsc271926g00024 404 MobiDBLite consensus disorder prediction 147 161 - -
Stsc271926g00024 404 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 109 352 - -
Stsc271926g00024 404 MobiDBLite consensus disorder prediction 144 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271926g00024 Stsc-Chr271926 92753 95156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271926g00024 221 352 Homeobox Transcription Factor Family AT3G19510 70.455 8.61e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271926g00024 - - adu:107488674 572.007