Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271926g00023 ATGAATGAACAAAGGGTGCTAGCCACTATGAGGAACAACGGCACTGTCTTTGATGAAAACTCACATCAAGGTTCTGATAATATAAGACGGAATTCTCTTGTTCAACTATCTGCTTCTCCCCAATATGATTTGGAGAAGAGTTCTCAGGTTGGAGAAGCTTCCTGCCATATAAAAATTACTCAAGAGCCAGAGCCAGAACTGGCCTTTCGATATTTATCTCAGTCGCAAAGAAATTCTCAACCAGCCTTCCAAAATGTTCAAAGTGGATCCTTAGAAACAACTAACTCAATAAGTAGCATTTTTGTTGAGGATCGAATGCAACCGACTCCTGCAGAAAAGAACATGAGTTCAGTGATTGAACACTTGGATCTGCCTACTGGGGATGTTGCGGAAAATTATGGTCCTAACTGTTTGCAAAGAAAGTCTAAAAGGCTGACTCAAAGGAGGTTAAAGTCGGAGGACAACAGAACTTCAAAATTACTCAAGGGAAAATATACACTGAGGTCTTCGGGAAGCAGTGACAGGGCTTTGCAGCCGCAGACTCAAGAAAAATGTAAAGTGCCTGAACTAAGTAGTGATTTGGTTGATGTTAAACATGTTGGAGAGAAGAAGAGAAGAGGGAGGAAGAGAAAAGAGTGGGGAGGAGAGGGAGTTATTATTGATGAATTTTCGAGAATTAGGAGTCACTTACGATACTTACTGAACCGAGTAAGCTATGAGCAAAGCTTGATTGATGCTTATTCTGGACAGGGCTGGAAAGGATACAGCACTGAAAAACTGAAGCCTGAGAAGGAGCTTCAACGAGCTAAGTCTGAAATAGTTAAGCGTAAATTGAAAATTCGGGATCTATTTTGGAATTTGGGTTTATTATGCTCTGAAGGAAAGCTTCCAGAGTCTTTGTTTGATTCAGAAGGAGCAATACGCAGTGACGATATTTTCTGTGCAAAATGCGGGTCCAAAGAGCTGACCACCGATAATGATATAATTCTCTGTGATGGTGGTTGTGACCGTGGATTTCACCAGTGCTGTTTAAATCCTCCATTGTTAACTAAAGACATTCCACCTGGCCATGAAATTTGGCTATGCCCGGGATGTAATTGCAAGCTTGAATGCATTAAACTTCTTAATGACTCCTTAGGAACAAGTCTTTCTATTAGAGACAGCTGGGAGCGGGTTTTTCCTGAAGCAACAGCAGCAGCTGGAATTAATGAGGGCCATAACCCGAGGCTTCCTTCAGTTGATACTGATGACAACCGTTACATTAATCCTAAAGCTCCAGAAGATGAAGAGGTTGAAGGTGGAGAATCAAGCTCTGATGGATCTGATTATGCTTCTGATTCTGAAAAAAAATTGAAAGATTTGCATTCAGAGGACGATGATTATGATCCAAATGCTCCAGATACTGATAGCGGAGCCTCTGAAGAAAATTCAAGCTCTGGTTTCGTTTCTGATGACACTGGGGACGAAGATCAAACCGCTTGCACCACAAGATGA 1494 0.4157 MNEQRVLATMRNNGTVFDENSHQGSDNIRRNSLVQLSASPQYDLEKSSQVGEASCHIKITQEPEPELAFRYLSQSQRNSQPAFQNVQSGSLETTNSISSIFVEDRMQPTPAEKNMSSVIEHLDLPTGDVAENYGPNCLQRKSKRLTQRRLKSEDNRTSKLLKGKYTLRSSGSSDRALQPQTQEKCKVPELSSDLVDVKHVGEKKRRGRKRKEWGGEGVIIDEFSRIRSHLRYLLNRVSYEQSLIDAYSGQGWKGYSTEKLKPEKELQRAKSEIVKRKLKIRDLFWNLGLLCSEGKLPESLFDSEGAIRSDDIFCAKCGSKELTTDNDIILCDGGCDRGFHQCCLNPPLLTKDIPPGHEIWLCPGCNCKLECIKLLNDSLGTSLSIRDSWERVFPEATAAAGINEGHNPRLPSVDTDDNRYINPKAPEDEEVEGGESSSDGSDYASDSEKKLKDLHSEDDDYDPNAPDTDSGASEENSSSGFVSDDTGDEDQTACTTR 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271926g00023 497 MobiDBLite consensus disorder prediction 162 183 - -
Stsc271926g00023 497 CDD PHD_PRHA_like 313 365 IPR045876 -
Stsc271926g00023 497 FunFam Homeobox protein HAT3.1 294 371 - -
Stsc271926g00023 497 SUPERFAMILY FYVE/PHD zinc finger 306 373 IPR011011 -
Stsc271926g00023 497 SMART PHD_3 313 366 IPR001965 -
Stsc271926g00023 497 Pfam PHD-finger 313 368 IPR019787 -
Stsc271926g00023 497 ProSiteProfiles Zinc finger PHD-type profile. 311 368 IPR019787 -
Stsc271926g00023 497 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 109 491 - -
Stsc271926g00023 497 MobiDBLite consensus disorder prediction 400 497 - -
Stsc271926g00023 497 MobiDBLite consensus disorder prediction 147 161 - -
Stsc271926g00023 497 ProSitePatterns Zinc finger PHD-type signature. 314 365 IPR019786 -
Stsc271926g00023 497 MobiDBLite consensus disorder prediction 469 497 - -
Stsc271926g00023 497 MobiDBLite consensus disorder prediction 144 183 - -
Stsc271926g00023 497 MobiDBLite consensus disorder prediction 442 461 - -
Stsc271926g00023 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 370 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271926g00023 Stsc-Chr271926 92502 95156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271926g00023 221 454 Homeobox Transcription Factor Family AT3G19510 56.735 3.13e-88 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc271926g00023 PHD 2.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271926g00023 - - adu:107488674 785.023