Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271926g00010 ATGGAACCAGCAAAGGCAACCATAGCAGCTTCTCAATTCCACCATCATCACCACCACTACCACAACACCAAGTGCATCAAGATCTTTTGGGGATTGAAAATTCTTCTCCTACTGACTTTATTCAAACAGTCATCAGCTGCATCAGATGGCAACATTGTCAAGAGCTTACCAGGCTTCCCCGGAGAGCTACCTTTCCTACTTGAGACAGGGTACATAAGCGTAGGGGAAGTAGATGAGATTGAGCTATTTTATTACTTCATAGAGTCAGAGGGGGAGCCAGAAGATGATGCACTTGTGCTTTGGCTCACAGGAGGCCCCGGTTGCTCAGCTCTCTATGGTCTCATGTATGAGATTGGTCCTTTAGCTTTTGACTATGGAAGGTCCAGTGGGGGAAACAATCCAGTTTTAACTTTAAACGATTACTCGTGGACTAAGGTTGCCAACATTATTTTCTTGGATGCGCCTGTTGGCACTGGATTCTCATATGCCGAAACTTCACATGGATACAACACAAGTGACACAAAATCAGTTGCAGATATTTATATGTTCCTGAGAAAGTGGCTTGTAGCTCATCCTAAGTTTCGAGCAAATCCTCTCTACATTGCTGGTGATTCTTACAGCGGAATCACAGTTCCAGTCCTTGTTAAAGAAATCTCTGATGGTAACGAAGCTGGAACGTTACCACCCATCAATATCAGAGGTTACATCCTAGGAAACCCATCAACTGATACCGAATATGACATGAACTCGAGAATTAAGTTTTCCTACAGAGTTGGACTTCTATGTGATGAACTCTATCAGGCACTGGAGCTTTTCTGTAAAGGAGAGTATGTTCACCCAAATAAAAGTGAAGGTGGATGCATTACCAGTCTTGAGAAAGTGGATATGTGCTTGAAAGACATATACGCTCCAATGATATTGGAGAGGAAGTGTAGCCCTCTTTCATCAGCAAAACCGAACAACATTCTTGAGTGGGCTTCAACCACAAACCTATCATCATCAGATGCCCACCTTTTAGAACTTGGACACTGCAGGGACTATAACTACTTGTTAGTAAACATCTGGGCTAATGATGAACAAGTTCAAGAAGCTCTGCATGTTAGAAACGGAACTATAAGAACGTGGGAGATGTGTAGTAAAAACTTAGCGTATGTGCATGACGTAACAAGTAGTGTTGAATATCACCTCAACTTGACCAGGGAAGACCTTAGATCCATCATTTACAGCGGAGATCATGATCTGCTTGTTCCATATGTGGGCACTGAGGAATGGATACAATCTCTGAATTTGACTGTTTCTTCTGATGATGTGTGGAGGCCATGGTTTCTTGATGGACAAGTTGCAGGGTCTGCTGTTTGA 1359 0.429 MEPAKATIAASQFHHHHHHYHNTKCIKIFWGLKILLLLTLFKQSSAASDGNIVKSLPGFPGELPFLLETGYISVGEVDEIELFYYFIESEGEPEDDALVLWLTGGPGCSALYGLMYEIGPLAFDYGRSSGGNNPVLTLNDYSWTKVANIIFLDAPVGTGFSYAETSHGYNTSDTKSVADIYMFLRKWLVAHPKFRANPLYIAGDSYSGITVPVLVKEISDGNEAGTLPPINIRGYILGNPSTDTEYDMNSRIKFSYRVGLLCDELYQALELFCKGEYVHPNKSEGGCITSLEKVDMCLKDIYAPMILERKCSPLSSAKPNNILEWASTTNLSSSDAHLLELGHCRDYNYLLVNIWANDEQVQEALHVRNGTIRTWEMCSKNLAYVHDVTSSVEYHLNLTREDLRSIIYSGDHDLLVPYVGTEEWIQSLNLTVSSDDVWRPWFLDGQVAGSAV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271926g00010 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 187 212 IPR001563 GO:0004185|GO:0006508
Stsc271926g00010 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 139 151 IPR001563 GO:0004185|GO:0006508
Stsc271926g00010 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 152 162 IPR001563 GO:0004185|GO:0006508
Stsc271926g00010 452 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 53 445 IPR001563 GO:0004185|GO:0006508
Stsc271926g00010 452 SUPERFAMILY alpha/beta-Hydrolases 51 450 IPR029058 -
Stsc271926g00010 452 Pfam Serine carboxypeptidase 57 450 IPR001563 GO:0004185|GO:0006508
Stsc271926g00010 452 Gene3D alpha/beta hydrolase 62 452 IPR029058 -
Stsc271926g00010 452 FunFam Serine carboxypeptidase-like 19 46 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271926g00010 Stsc-Chr271926 45983 48368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271926g00010 351 449 Calmodulin-binding Proteins AT2G22960 48.485 4.81e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271926g00010 K16296 - cave:132177555 506.138