Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271925g00023 ATGTCTTCAATAATAACCAGCGGTGGCTACAATGCTGCAGTGCTCTTTGAAGGGCAAGCTCACTTGTACAAACTCGTATTTAGCTTCGTCACTCCAATGTGTCTCAAGTGGGCTACTGAGTTAGGTATACCAACAATAATCCACAAACATGGCAAACCCATTACACTTGCTCACTTACTCTCAGCCCTCAATCTTCCACCCTCTAAAAACTGGGTCGTGCCGCGCCTCATGCGCTTTCTAGCACACAATGGACTCTTTGCCATTGTAGGAGTTCAAGAAAATGGAGAAGAACAAGAGAAGGAAGGGTACGCTCTAACCCCGGCGTCAGAGCTACTTGTTGAAGGTACTGACTATTGCTTATCCACCATGGTTATGTTCACAGCGTTTGATAGTATTGAAGTTATTAAGTTGGGGGATTGGATTCGCTCTCGGGAAGAGAATATATCGCCATTAGAGGCTGCCTTTGGAGTTAACTCTTGGGATTTTGTTCAAAGAAATCCTGGGAGGTTCAGTGCCTTCAATGAGGGCATGGCAAGTGATTCTCAAATGATGAACTTGGCATTGAGAGACTGCAAATCAGTGTTTGAAGGGATTGAATCTGTTGTGGATGTTGGTGGTGGAAATGGAGCCACTGGAAAAATCATGTGTGAAGCATTTCCTGAGTTGAAATACACTGTGTTTGACCTTCCACCTGTTGTTGCAAATTTGAACAGAATTGGTAATCTCAGTTATGTTGGTGGTGACATGTTTCACTCTATTCCTCAAGCTGATACCATTTTACTCAAGTGGGTTTTACATAATTGGAATGACGATGAATGCAAAAAAATTCTTAAAAATTGCAAAGATTCCATCTCAAGAAAGGGAAAAAGAGGAAAAGTGATAATCATTGATGTAGTTATAAATGAAGAGGAAGACAAAGATGATATGACACAAATAAAACTTCTTCTGGACATGAGCATGGTGGCACTTTTTGGCGCAAAAGAACGAGATGCAAAAGAATGGAAAAAACTTTTCATAGATTCTGGTTTTAAGCACTACAAAATATTTCCTCAATTTGGGTTTAGGTCTAATTATTGA 1077 0.4048 MSSIITSGGYNAAVLFEGQAHLYKLVFSFVTPMCLKWATELGIPTIIHKHGKPITLAHLLSALNLPPSKNWVVPRLMRFLAHNGLFAIVGVQENGEEQEKEGYALTPASELLVEGTDYCLSTMVMFTAFDSIEVIKLGDWIRSREENISPLEAAFGVNSWDFVQRNPGRFSAFNEGMASDSQMMNLALRDCKSVFEGIESVVDVGGGNGATGKIMCEAFPELKYTVFDLPPVVANLNRIGNLSYVGGDMFHSIPQADTILLKWVLHNWNDDECKKILKNCKDSISRKGKRGKVIIIDVVINEEEDKDDMTQIKLLLDMSMVALFGAKERDAKEWKKLFIDSGFKHYKIFPQFGFRSNY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271925g00023 358 Gene3D - 10 112 IPR036388 -
Stsc271925g00023 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 358 IPR016461 GO:0008168
Stsc271925g00023 358 FunFam O-methyltransferase ZRP4 115 357 - -
Stsc271925g00023 358 Pfam Dimerisation domain 33 81 IPR012967 GO:0046983
Stsc271925g00023 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 355 IPR029063 -
Stsc271925g00023 358 CDD AdoMet_MTases 201 300 - -
Stsc271925g00023 358 FunFam Coniferyl alcohol 9-O-methyltransferase 6 112 - -
Stsc271925g00023 358 Pfam O-methyltransferase domain 136 344 IPR001077 GO:0008171
Stsc271925g00023 358 PANTHER O-METHYLTRANSFERASE 21 347 IPR016461 GO:0008168
Stsc271925g00023 358 PIRSF O-mtase 9 357 IPR016461 GO:0008168
Stsc271925g00023 358 SUPERFAMILY "Winged helix" DNA-binding domain 15 115 IPR036390 -
Stsc271925g00023 358 Gene3D Vaccinia Virus protein VP39 118 357 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271925g00023 Stsc-Chr271925 143431 145137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271925g00023 24 348 Monolignol Biosynthesis Gene Families AT5G54160 31.832 4.81e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271925g00023 K22588 - gmx:100819796 390.578