Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271925g00022 ATGAGTGACTGCCATAATAATGGTGGTAGTAATAAGAACCTCTTTGAAGGCCAAGCCCTCTTATACAAACACCTATTTAGCTTCTTCACCCCTGTCTGTCTTAAGTTGGCAGTTAAATTAGGTATACCAACCATAATCCACAATCATGGCAAACCCATCACTCTTTCGGAGTTGCTTTCAGCTCTGCATCTTCCTCCATCTAAAGCTTGCTTTCTGCCACGCCTCATGCGCTTTCTAGCACATAATGGACTTTTTAATATTGTAAGAATTCATTATGATAATGCCGAACAAGAAGCAGAAGAAAAGGAAACTCATTATGCTCTAACCTCTGCATCAGAGCTACTTGTTGAAGGTAGTGAAAATTGCTTTTCCCCAATGATTAAGTTTGTTGTTCAACCCACAATGATTGATGCTTGGATTAGAATGGATGAATGGATTTATGGGGAAGAGAACTCAGTATTTGAAATTGCATATGGAGTTAATAGTTTGTGGGATTTCTTTGCAAGCAACAATGAACAAATGAATATTTTCAATGAGGCTCTAGCAAGTGATTCTCAAATGATGAACTTGGCATTGGGAGCTTGCAATTCAGTGTTTGAAGGGATAGAATCTATTGTGGATGTTGGTGGTGGAAATGGAGCCACCGGTAAAATAATTTCTGAGGCATATCCTAAGTTTCAATATATTGTGTTTGATCTTCCATCAGTTGTAGCAAATTTGCATGGAATTGGTAATTTGAGCTATGTGGGTGGAGACATGTTTAAATCTATTCCAGAAGCTGATGCAATCCTTTTAAAGTGGGTTTTACACGATTGGAATGATGACTATTGTATAAAGATTTTAAAAAATTGCAAAGAATCTATTGTAAGAAAAGGAAAGGGAGGAAAGATTATCATCATCGACGTAGTGATAAATGAAGAGGAAGACAAATATGAAACGACTCAAGTTAAACTCCTTCTGGATATGACCATGGCAGCTAGTCATAATGCCAAAGAACGAACCGAAAAAGAGTGGAAAAAACTCTTCATAGAAACGGGTTTCAATCGCTACAAAATATCTCCTCTATTTGGTTTTAGATCTCTTATTGAACTCTATATTATTTAA 1104 0.3668 MSDCHNNGGSNKNLFEGQALLYKHLFSFFTPVCLKLAVKLGIPTIIHNHGKPITLSELLSALHLPPSKACFLPRLMRFLAHNGLFNIVRIHYDNAEQEAEEKETHYALTSASELLVEGSENCFSPMIKFVVQPTMIDAWIRMDEWIYGEENSVFEIAYGVNSLWDFFASNNEQMNIFNEALASDSQMMNLALGACNSVFEGIESIVDVGGGNGATGKIISEAYPKFQYIVFDLPSVVANLHGIGNLSYVGGDMFKSIPEADAILLKWVLHDWNDDYCIKILKNCKESIVRKGKGGKIIIIDVVINEEEDKYETTQVKLLLDMTMAASHNAKERTEKEWKKLFIETGFNRYKISPLFGFRSLIELYII 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271925g00022 367 Gene3D Vaccinia Virus protein VP39 117 365 IPR029063 -
Stsc271925g00022 367 FunFam Coniferyl alcohol 9-O-methyltransferase 4 115 - -
Stsc271925g00022 367 Pfam Dimerisation domain 33 80 IPR012967 GO:0046983
Stsc271925g00022 367 CDD AdoMet_MTases 205 286 - -
Stsc271925g00022 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 364 IPR029063 -
Stsc271925g00022 367 Gene3D - 3 115 IPR036388 -
Stsc271925g00022 367 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 366 IPR016461 GO:0008168
Stsc271925g00022 367 PANTHER O-METHYLTRANSFERASE 26 351 IPR016461 GO:0008168
Stsc271925g00022 367 FunFam O-methyltransferase ZRP4 117 366 - -
Stsc271925g00022 367 PIRSF O-mtase 2 366 IPR016461 GO:0008168
Stsc271925g00022 367 SUPERFAMILY "Winged helix" DNA-binding domain 13 119 IPR036390 -
Stsc271925g00022 367 Pfam O-methyltransferase domain 139 348 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271925g00022 Stsc-Chr271925 139439 141647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271925g00022 31 364 Monolignol Biosynthesis Gene Families AT5G54160 31.858 2.33e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271925g00022 K22588 - gmx:100813225 394.815