Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271925g00020 ATGGGAATTGAGGATTACCACTACAGAACCAGAAAGGTTAAAGATATTTCAAAGCACATTAGGATTTGGCTTGAAACCTATCAAACTGCTGAGGAAGCTACTAGAGCCTATGATGAAGCTGATTTTCTCCTTAGAGGTTCCAACACTCACACCAACTTCAACGCTCGTCACGCCATTGCTCCCAGTTCTCCTATATCTCTCGCCATAATTGAATATGATGAACTGCTCGATGGGTCTTGTGGATTAAATGAAGAAAGGCAACTCTCAGATTCACTTTTTGCCATGAATGAGGATGAAAATGAGGATGAGCGTGATAGAGACGCTCAAGCAGGAGTGACCGAGGTCGGAGCCGTTACCGCCGCCGACGGCGTTGAAAATGAGGAATCCCTGGAGGCTAGTGTAGTTGTCGGCAAGCTTGCAAAGGCGGTCAAGGCAGAGGTCAACGATCTCCTTACCGATGGTGTAGTGTCCCTTGACGAAGTGGTTTGCCAGAGATAA 498 0.4679 MGIEDYHYRTRKVKDISKHIRIWLETYQTAEEATRAYDEADFLLRGSNTHTNFNARHAIAPSSPISLAIIEYDELLDGSCGLNEERQLSDSLFAMNEDENEDERDRDAQAGVTEVGAVTAADGVENEESLEASVVVGKLAKAVKAEVNDLLTDGVVSLDEVVCQR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271925g00020 165 SMART rav1_2 7 60 IPR001471 GO:0003700|GO:0006355
Stsc271925g00020 165 CDD AP2 13 55 IPR001471 GO:0003700|GO:0006355
Stsc271925g00020 165 SUPERFAMILY DNA-binding domain 15 55 IPR016177 GO:0003677
Stsc271925g00020 165 Gene3D AP2/ERF domain 4 56 IPR036955 GO:0003700|GO:0006355
Stsc271925g00020 165 ProSiteProfiles AP2/ERF domain profile. 1 54 IPR001471 GO:0003700|GO:0006355
Stsc271925g00020 165 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271925g00020 Stsc-Chr271925 129912 131280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271925g00020 13 69 AP2-EREBP Transcription Factor Family AT5G19790 59.649 3.43e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271925g00020 K09286 - gmx:100809046 73.559