Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271925g00019 ATGACAGTTGGTTCCAAATCGACGAAGACAACACGGGAAACGTGCTTGCCATTGCCGGTCTCACTGAAGAAAGTGTTGAATGCATCGTGCGCCACTCCAAAGGAAGTATCACTGGCAGTTACAGATAGTGATGAAAGAAGTGAAATGAAACCGATACATGTCTCGACTGAAGGCTCTGACAGCGGCGACGGCTACAGCGTGGTGGGGGTGGAGGGCTCGCGGCTGACTGAGGAGGGGATGCGAGATCGCTTTGAAGCGGCAGAGAGAAGAGGATATTCCTTGAATCTTCCACCCTCTAAAACATGGGTGGTGCCGCGCTTCATGCGCTTTCTAGTGCACAATGGACTCTTTGCAATTGTAAGAGTTCATGACGACGACAACGACGAAGAAGAAGAGAAGGAAGCATATGCTCTAACCCCGGCTTCAGAGCTACTTGTTGAAGGGACTAAGTATTGCTTTTCCCCAATTATTAAGAGTACTCTTGTTCACGAAAACATTGGTACAAATCTTAGAATGGGAGACTGGATCCGCGGGGAAGAGGTTTCAGTATTTGACACAGCACATGGAGTTAGCTTTTGGGATTTGATTCATAACAATCCCGAATTGATGATTGCCTTCAATGAGGCCATGGCAAGTGATTCTCAAATAGTGAGCTTGGCATTGAGAGATTGCAACTCTGTGTTTGAAGGTGTAGAATCTATTGTAGATGTTGGTGGTGGAAATGGAGCCACTGGAAAAATCATTTGTGAGGCATTTCCTCACTTGCAATACATTGTTCTTGATCTTCCATCAGTTGTTGCAAATTTGACAGCAAATGCTAATTTGAGTTATGTCGGTGGAGACATGTTTGTATCTGTTCCTCAAGCCCATGCAGTGTTATTAAAGTGGGTTTTACACGATTGGAATGATGGAGACTGCATAAAAATTCTAAAAAATTGCAAAAAATCAATTTCAGAAAAAGGAAAAGTTATTATCATTGATATAGTAATAAATAATGAAGAGCAAGATGATGAAATGACCTCAGTAAAACTTCTCTTTGATATAAACATGGCAACTGCTTTGAGTGCAAAAGAAAGAAATGAAAAAGAATGGAAACAACTCTTCATAGAAGCTGGTTTCAACCCCGACGAGGCTGTGCAGACCAGGGAGGAGAACAAGTGGAGGCAACTCGACGGCAGTGTCAGTGACAAGACCAGAAGTGAGAAATATGGTGAACGGAAGGCGGTTCTCGCTGAGAAGACAAGAACTCGCGACTGTGGTTTTGGCGTTGGGTGGTCGGTAACGGTGAACAACGGAGATTTTGTGGACAGCGGAGGTTAG 1320 0.4409 MTVGSKSTKTTRETCLPLPVSLKKVLNASCATPKEVSLAVTDSDERSEMKPIHVSTEGSDSGDGYSVVGVEGSRLTEEGMRDRFEAAERRGYSLNLPPSKTWVVPRFMRFLVHNGLFAIVRVHDDDNDEEEEKEAYALTPASELLVEGTKYCFSPIIKSTLVHENIGTNLRMGDWIRGEEVSVFDTAHGVSFWDLIHNNPELMIAFNEAMASDSQIVSLALRDCNSVFEGVESIVDVGGGNGATGKIICEAFPHLQYIVLDLPSVVANLTANANLSYVGGDMFVSVPQAHAVLLKWVLHDWNDGDCIKILKNCKKSISEKGKVIIIDIVINNEEQDDEMTSVKLLFDINMATALSAKERNEKEWKQLFIEAGFNPDEAVQTREENKWRQLDGSVSDKTRSEKYGERKAVLAEKTRTRDCGFGVGWSVTVNNGDFVDSGG 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271925g00019 439 Pfam O-methyltransferase domain 172 374 IPR001077 GO:0008171
Stsc271925g00019 439 Gene3D - 92 145 IPR036388 -
Stsc271925g00019 439 MobiDBLite consensus disorder prediction 39 53 - -
Stsc271925g00019 439 SUPERFAMILY "Winged helix" DNA-binding domain 93 148 IPR036390 -
Stsc271925g00019 439 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 154 377 IPR029063 -
Stsc271925g00019 439 Gene3D Vaccinia Virus protein VP39 148 386 IPR029063 -
Stsc271925g00019 439 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 52 394 IPR016461 GO:0008168
Stsc271925g00019 439 FunFam O-methyltransferase ZRP4 147 381 - -
Stsc271925g00019 439 PANTHER O-METHYLTRANSFERASE 96 377 IPR016461 GO:0008168
Stsc271925g00019 439 MobiDBLite consensus disorder prediction 39 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271925g00019 Stsc-Chr271925 124756 129861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271925g00019 98 373 Monolignol Biosynthesis Gene Families AT1G77520 31.338 7.70e-42 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271925g00019 K22588 - gmx:100818724 312.768