Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271925g00018 ATGAGTAGTGGCCATAGTTATGGTAAGCTCTTTGAAGGACAAGCTCACCTATACAAACTCCTATATAGCTTTCTCCCTTCTATGTGCCTCAAATGGGCTACTGATTTAGGAATACCAACAATAATCCACAAACATGGCAAACCCATTACACTTGCTTACTTACTCTCAGCCTTGAATCTCCCATCCTCTAAAACATGGGTGGTGCCGCGCTTCATGCGCTTTCTGGTGCACAATGGACTCTTTGCTATTGTAAGAGTTCAAGATGATGACGGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGCATACGCTTTAACACCGGCATCAGAGCTTCTAGTTGAAGGCACTAATAATCATAGCATGTCCCCAAATATTAAGAGTAATCTTCACGAATTAATGATTGGTGCAACCCTTAGAATGGGAGACTGGGTACGCCGGGAAGATCGCTCAGTTGTTGAGACTTCTCTTGGAGTTAGCTTTTGGGATTTGGCTCATAGCAATCCCGAAATCATGAGTGCCTTCAATGAGGCCATGGCATGTGATTCTCAGATGGTGAACTTGGCATTGAAAGATTGCAAATCAGTGTTTGAAGGGATTGAATCTGCTGTGGATGTTGGTGGTGGAAATGGAGCCACCGCTAAAATCATTTATGAGGCGTTTCCTGAGTTGAAATTCATTGTGTTTGACCTTCCATCGGTTGTAGCAGATTTACAAGGAATTGGTAATTTGAGTTATGTTGGTGGCGACATGTTTCAATCTATTCCTCAGGCTGATGCTGTCTTATTAAAGGTTCAGCACCTCTCCGAAAAGCTTTGCCAAACTAAGCCAGAGAATAACACGAACTTATCTTAA 858 0.4242 MSSGHSYGKLFEGQAHLYKLLYSFLPSMCLKWATDLGIPTIIHKHGKPITLAYLLSALNLPSSKTWVVPRFMRFLVHNGLFAIVRVQDDDGEEEEEEEEEEKEAYALTPASELLVEGTNNHSMSPNIKSNLHELMIGATLRMGDWVRREDRSVVETSLGVSFWDLAHSNPEIMSAFNEAMACDSQMVNLALKDCKSVFEGIESAVDVGGGNGATAKIIYEAFPELKFIVFDLPSVVADLQGIGNLSYVGGDMFQSIPQADAVLLKVQHLSEKLCQTKPENNTNLS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271925g00018 285 Pfam O-methyltransferase domain 142 265 IPR001077 GO:0008171
Stsc271925g00018 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 265 IPR029063 -
Stsc271925g00018 285 FunFam Coniferyl alcohol 9-O-methyltransferase 1 114 - -
Stsc271925g00018 285 Gene3D Vaccinia Virus protein VP39 117 276 IPR029063 -
Stsc271925g00018 285 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 18 285 IPR016461 GO:0008168
Stsc271925g00018 285 PANTHER O-METHYLTRANSFERASE 13 266 IPR016461 GO:0008168
Stsc271925g00018 285 Pfam Dimerisation domain 28 76 IPR012967 GO:0046983
Stsc271925g00018 285 SUPERFAMILY "Winged helix" DNA-binding domain 9 117 IPR036390 -
Stsc271925g00018 285 Gene3D - 5 114 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271925g00018 Stsc-Chr271925 121954 123413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271925g00018 23 265 Monolignol Biosynthesis Gene Families AT5G54160 30.081 4.86e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271925g00018 K22588 - gmx:100818947 269.24