Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271925g00017 ATGTCTCTCAAGTGGGCTACTGAGTTAGATATACCGACCATAATCCACAAACATGGCAAACCCATCACTCTTCCTCACTTACTCTCAGCCTTGAATCTTCCACCCTCTAAAACATGGGTGGTGCCGCGCTTCATGCGCTTTCTAGTGTATCATGGACTCTTTGCTATCGTAAGAGTTCATGACTACGACGACAAAGAAGAAGAAAAGGAAGCATACGCTCTAACCCCGACGTCAGAGCTACTCGTTGAAGGCACTAATCATTGCTTAACCCCATTTGTTAAGTGTCATCTTCATGATCGCGAAATGTTTGGTGCAGGACTTAGAATGGGAGAATGGATTCGTGGGGAAGAGAGATCCGTACTTGAGACTGCCTTTGGAGTTGGCTTTTGGGATTTGATTCATCAAAGTAATCCCGGAAGGATGAGTGTCTTCAATGAGGGCATGGCAAGTGATTCTCAAATGGTGAACTTGGCGTTGAAAGATTGCAAATCAGTGTTTGAAGGGATTGAATCTGTTGTGGATGTTGGTGGTGGAAATGGAGCCACCGCTAAAATCATTTGTGAGGCGTTTCCTGAGTTGAAATTCATTGTGTTTGACCTTCCGCCGGTTGTTGCAGATTTGAGAGGAAGTCATAATTTGACTTATGTTGGTGGTGACATGTTTCAATCTATTCCTCAAGCTCATGCAGTCTTATTGAAGGAGTACATTGGTTAA 714 0.4384 MSLKWATELDIPTIIHKHGKPITLPHLLSALNLPPSKTWVVPRFMRFLVYHGLFAIVRVHDYDDKEEEKEAYALTPTSELLVEGTNHCLTPFVKCHLHDREMFGAGLRMGEWIRGEERSVLETAFGVGFWDLIHQSNPGRMSVFNEGMASDSQMVNLALKDCKSVFEGIESVVDVGGGNGATAKIICEAFPELKFIVFDLPPVVADLRGSHNLTYVGGDMFQSIPQAHAVLLKEYIG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271925g00017 237 Pfam Dimerisation domain 1 49 IPR012967 GO:0046983
Stsc271925g00017 237 SUPERFAMILY "Winged helix" DNA-binding domain 1 84 IPR036390 -
Stsc271925g00017 237 Gene3D - 1 81 IPR036388 -
Stsc271925g00017 237 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 96 233 IPR029063 -
Stsc271925g00017 237 Pfam O-methyltransferase domain 110 234 IPR001077 GO:0008171
Stsc271925g00017 237 Gene3D Vaccinia Virus protein VP39 83 236 IPR029063 -
Stsc271925g00017 237 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 237 IPR016461 GO:0008168
Stsc271925g00017 237 PANTHER O-METHYLTRANSFERASE 1 233 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271925g00017 Stsc-Chr271925 116980 117764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271925g00017 1 233 Monolignol Biosynthesis Gene Families AT5G54160 30.380 4.63e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271925g00017 K22588 K13262 gmx:100818947 251.136