Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271925g00016 ATGAGTAGTAGTAATGGACATAGTTATGGCAAGCTCTTTCAAGGGCAAGCTCAGTTATACAAACTCCTATTGAGCTTCCTCACTCCCATGCCTCTCAAGTGGGCTACTGAGTTAGGTATACCAACAATAATCCACAAGCATGGCAAACCCATCACACTTGCTCACTTACTCTCAGCCCTCAATCTTCCACCCTCTAAAAACTGGGTCGTGCCGCGCCTCATGCGCCTTCTAGCGCACAATGGAATCTTTGCCATTGTAAGAGTTCATGACGACGACAACAGAGAAGAAGAGGAGGAGGAGAAGGAAGCATACGCTCTAACCCCGGCGTCGGAGCTTCTTGTTGAAGGGAGTAGCCATTGCTTATCTGCAACTGTTATGGATGCTCCTGATCACAAAACTTTTAGTGCAGCCCTTAGAATGGGAGATTGGACCCGCGGGGAAGATCGCTCCATATTTGATACTGCCTTTGGGGCTAGCTTTTGGGATCTGACTCATAAAAATCCTGACAAGTTCGTTGCCTTCAATGAGTCCATGGCAAGTGATTCTCAGATGGTGAACTTGGCATTGAGAGATTGCAAATCAGTGTTTGAAGGGATTGAATCTGTTGTGGATGTTGGTGGTGGAAATGGAGCCACTGGAAAAATCATGTGTGAAGCATTTCCTGAGTTGAAATACACTGTGTTTGACCTTCCACCTGTTGTTGCAAATTTGAACAGAATTGGTAATCTCAGTTATGTTGGTGGTGACATGTTTCAATCTATTCCTCAAGCTGATGCAGTGTTGTTAAAGTGGGTTCTACATAATTGGAATGATGAAGATTGCATAAAAATTCTAAAGAATTGCAAAAAGTCTATTTCGGAAAAAGGAAAAGTGATTATTATTGATGTAGTAATAGATGATGAAGAGCAAGAGGAAGATGAAATGACAGCAACAAAACTTCTTTTTGACATAGAAATGGCCGTTCTTTTTGGTGCAAAAGAAAGAAGCAAAAAAGAATGGAAACAACTCATCAAAGAAGCTGGTTTCAACAATTATAAAATATCTCCTATATTTGGTTTTAGGTCTCTCATAGAAGTCTATCCTTAA 1086 0.4134 MSSSNGHSYGKLFQGQAQLYKLLLSFLTPMPLKWATELGIPTIIHKHGKPITLAHLLSALNLPPSKNWVVPRLMRLLAHNGIFAIVRVHDDDNREEEEEEKEAYALTPASELLVEGSSHCLSATVMDAPDHKTFSAALRMGDWTRGEDRSIFDTAFGASFWDLTHKNPDKFVAFNESMASDSQMVNLALRDCKSVFEGIESVVDVGGGNGATGKIMCEAFPELKYTVFDLPPVVANLNRIGNLSYVGGDMFQSIPQADAVLLKWVLHNWNDEDCIKILKNCKKSISEKGKVIIIDVVIDDEEQEEDEMTATKLLFDIEMAVLFGAKERSKKEWKQLIKEAGFNNYKISPIFGFRSLIEVYP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271925g00016 361 PANTHER O-METHYLTRANSFERASE 17 346 IPR016461 GO:0008168
Stsc271925g00016 361 FunFam O-methyltransferase ZRP4 115 361 - -
Stsc271925g00016 361 Gene3D Vaccinia Virus protein VP39 115 361 IPR029063 -
Stsc271925g00016 361 PIRSF O-mtase 1 361 IPR016461 GO:0008168
Stsc271925g00016 361 Gene3D - 1 113 IPR036388 -
Stsc271925g00016 361 FunFam Coniferyl alcohol 9-O-methyltransferase 2 113 - -
Stsc271925g00016 361 Pfam O-methyltransferase domain 142 343 IPR001077 GO:0008171
Stsc271925g00016 361 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Stsc271925g00016 361 SUPERFAMILY "Winged helix" DNA-binding domain 11 117 IPR036390 -
Stsc271925g00016 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 360 IPR029063 -
Stsc271925g00016 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 361 IPR016461 GO:0008168
Stsc271925g00016 361 CDD AdoMet_MTases 202 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271925g00016 Stsc-Chr271925 103228 104748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271925g00016 27 361 Monolignol Biosynthesis Gene Families AT1G51990 32.174 8.37e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271925g00016 K22588 K13262 gmx:100818724 395.201