Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271925g00003 ATGACAATGGTGGAAGAAGCGGTGGCTATAGAGGACGAAATCAAATCGGTCATGGCGGCTCCTCCGTCCAACTTCTCGGTGGTTGAGGACGGCGTTTACCGCTCCAGCTTCCCTAAACCTTCTAATTTTACTTTTCTTCAAACCCTAAATCTTCGATCCGTCATATGCTTATGCCCTGAACCGTATCCGGAGGAGAATCTTGAATTTCTTCAATCTCATAATATTCGTCTCTTTCAGTTTGGTATTGAGGGCAAGACGGATCTAACTCAGTCTATTGTCAAAAATACAATCACGGAGGCTCTCAAAGTTTTAATTGATGTGAGAAATCACCCAGTTTTGATCCATTGCAATAGTGGAAAGCATAGAACTGGTTGCCTTGTTGGATGCATGAGGAAATTACAAAATTGGTGTTTGGATTCAGTGTTTGAAGAGTACAAGAAATTTGCGGGTGCCAAATCAAGAAACACAGATTTGAAATTCATAGAAACCTTTGATATCTCAAACATGAGACAATGTCTTTACAGCATCATATACCAATACCAAGGATTTTCTTCAAACAAGAAGCCTCGCTTGTTGTTTAGATCCGATGACAACAATGTACAGAAACCACAATTGACAAAAGTTTGA 627 0.4003 MTMVEEAVAIEDEIKSVMAAPPSNFSVVEDGVYRSSFPKPSNFTFLQTLNLRSVICLCPEPYPEENLEFLQSHNIRLFQFGIEGKTDLTQSIVKNTITEALKVLIDVRNHPVLIHCNSGKHRTGCLVGCMRKLQNWCLDSVFEEYKKFAGAKSRNTDLKFIETFDISNMRQCLYSIIYQYQGFSSNKKPRLLFRSDDNNVQKPQLTKV 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271925g00003 208 ProSitePatterns Tyrosine specific protein phosphatases active site. 114 124 IPR016130 GO:0016311|GO:0016791
Stsc271925g00003 208 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 20 164 IPR029021 -
Stsc271925g00003 208 PRINTS Plant and fungal dual specificity phosphatase signature 56 69 IPR020428 GO:0016791
Stsc271925g00003 208 PRINTS Plant and fungal dual specificity phosphatase signature 75 89 IPR020428 GO:0016791
Stsc271925g00003 208 PRINTS Plant and fungal dual specificity phosphatase signature 19 36 IPR020428 GO:0016791
Stsc271925g00003 208 PRINTS Plant and fungal dual specificity phosphatase signature 92 106 IPR020428 GO:0016791
Stsc271925g00003 208 ProSiteProfiles Dual specificity protein phosphatase domain profile. 24 173 IPR020422 GO:0006470|GO:0008138
Stsc271925g00003 208 Pfam Tyrosine phosphatase family 21 169 IPR004861 -
Stsc271925g00003 208 PANTHER TYROSINE-PROTEIN PHOSPHATASE 19 178 - -
Stsc271925g00003 208 FunFam probable tyrosine-protein phosphatase At1g05000 18 168 - -
Stsc271925g00003 208 CDD PFA-DSP_Siw14 21 165 - -
Stsc271925g00003 208 Gene3D Protein tyrosine phosphatase superfamily 19 168 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271925g00003 Stsc-Chr271925 11644 13415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271925g00003 12 208 Protein tyrosine phosphatase (PTP) family AT3G02800 61.929 1.11e-93 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271925g00003 K18045 - qsu:112008997 301.597