Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271925g00002 ATGAGCTCCAAGGAGAAACCCACACTCGGTGGCACGCGGATTAAGACCCGCAAGCGGAATATTGCGGCGCCTTTGGACCCTGAAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTGTTGCTAAGAGCATTGAGTCTTCAGAACTTGACTTCTCAAGATACGGTGACACCTTTTTCGAGGTTGTTTTCATTGGATGTCGTACACAACCTGGGACAACCAAGCCTGATGAAGGGGATCGCCATCCTTACTCTATAATAGAGTGTGAGCCGAAGCGTGAAGTCATTTTGCCATCGGTGATCTACACGCAAAAGATTTTACGAAGGAAGCCATTCCTAATAAAGAATCTTGAAAATGTCATGCGAAGATTCCTACAATCCTTGGAGTTTTTTGAAGAAAATGAAAGGAAAAAGTTGGCAATCTTTACAGCACTTGCATTCTCCCAGAAACTATCCGGTCTTCCTCCAGAGACTGTCTTCCAACCACTTCTTAAAGATAATCTTGTGGGCAAAGGGCTAGTTCTGTCCTTTGTAACTGAGTTCTTTAAGGAGTATTTGGTTGACAACAGCCTTGATGATCTTATTTCAATTCTGAAACGGGGAAAAGTGGAGGACAATCTTTTGGACTTTTTCCCCCCTTCAAAAAGATCAAATGAGTCTTTTGCCGAGCATTTCAAGAAGGAAGGGCTGATAAACTTGGTGGAGTATAATGAGAAGAAAATATTTGAAGTGAAACTCAAGGAAATGAAGTCTACTTTGACGACACTGATAACGGAGGAAGCTGATATATCTGAAGTCATAGAAACAGTGAAGCTGCAAGTCAAAGATGCTAAATTGCCAGATATTGAGGTTGTGCGGGTGTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCAGGAAAAAATCAGCAACAGAATTCAAATTCAGCCCTGCGCCAGGTAAAAACTTGGGCAGCATTGTTGAATACCTTCTGCACCAGTGGGAAGCTTGAGCTTGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCAAAACTCATGAAGTTGTTCCCTGAGATTATCAGGTCTCTTTATGAGCAGGATGTGCTGGCTGAAGACACGATTCTTCACTGGTTCCGCAAAGGAACGAACACCAAGGGCAGGCAAAGCTTTGTGAAGGCACTTGAACCCTTCGTCAATTGGCTTGAGGAGGCAGAAGAGGAAGAATGA 1236 0.4337 MSSKEKPTLGGTRIKTRKRNIAAPLDPEAFSDAVVQIYLDNAGDLELVAKSIESSELDFSRYGDTFFEVVFIGCRTQPGTTKPDEGDRHPYSIIECEPKREVILPSVIYTQKILRRKPFLIKNLENVMRRFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFVTEFFKEYLVDNSLDDLISILKRGKVEDNLLDFFPPSKRSNESFAEHFKKEGLINLVEYNEKKIFEVKLKEMKSTLTTLITEEADISEVIETVKLQVKDAKLPDIEVVRVLWDVLMDAVQWSGKNQQQNSNSALRQVKTWAALLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYEQDVLAEDTILHWFRKGTNTKGRQSFVKALEPFVNWLEEAEEEE 411
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc271925g00002 411 Coils Coil 121 141 - -
Stsc271925g00002 411 FunFam ARM repeat superfamily protein 243 411 - -
Stsc271925g00002 411 SUPERFAMILY ARM repeat 252 408 IPR016024 -
Stsc271925g00002 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Stsc271925g00002 411 SMART 542_3 325 410 IPR003307 GO:0005515
Stsc271925g00002 411 CDD W2_eIF5C_like 216 404 IPR043510 -
Stsc271925g00002 411 Gene3D - 242 411 - -
Stsc271925g00002 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 2 411 - -
Stsc271925g00002 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc271925g00002 Stsc-Chr271925 4490 8554 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271925g00002 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 30.909 8.06e-08 52.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271925g00002 - - gmx:100782537 748.043