LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271925g00001	ATGCATGCAGGTCCATTCAACTTTGAGGCCTCAAAAACAGAAGGGAATCTTCCCACCTTGCATTTGAATCCATACAGCTGGTCTAAGGTTTCAAGCATTATTTATTTGGATTCTCCTGCTGGGGTGGGCCTCTCTTACTCCAAGAATTCCAGCAAATACCAAACTGGGGACTTGCAAACTGCATCTGATACTCATGCTTTTCTCTTAAAGTGGTTTGAGGAATTCCCTGAATTTCTTGATAATCCATTTTATATTTCCGGGGAGTCTTATGCTGGAATATATGTTCCCACGTTGGCTTATGAAGTAGTCAAAGGAATCAAGGGTGGTATTAAGCCCGTGATCAATTTCAAGGGTTACTTGATTGGAAATGGTGTCACGGACATATACTTTGATGGCAATGCTTTTATCCCATTTGTGCATGGCATGGGCCTCATATCTGACAGTATCTACGAGGAAGTAAAACGTTCTTGCAAAGGAAATGATGACATAAGTAATTTGTGCTCAAAGAGTTACGATAAAGTTTACAGGGCTGTTGATAATCTTAATGTGTACGACATACTAGAGCCATGCTATCATAACCCAAATAAAGCTTCAAAAGGAAATGTGAGTTTACCATCGAGTTTCAAGGAATTGGGGAAAACTGAGAAGCCACTCCCTGTGAGGAAGAGGATGTTTGGTAGGGCATGGCCACTTAGAGCAACAGTTAAAGAAGGCCCAGTTACATTATGGCCACAGTTGGCTGAAGATGGCCACATTCCTTGTGTTAGTGATGAGGTGGCTACTTCATGGCTCAACAACCAACAAGTCAGACAAGCCATTCATGCTCAACCGGAAAGTGTTTCGGGACCATGGGAATTATGCACTAGAAGAATAGGTTACAAGCACGATGCTGGAAGCATGATTACATACCACAAGAAACTAACCATCATGGGCTATAGAGCACTCATTTTCAGTGGTGACCATGATATGTGTGTGCCATTTACTGGAACTGAGGCATGGACTCGATCCCTTGGATATAAGATTATAGATGAATGGAGACCATGGACCTCTAATGACCAAGTTGCTGGATACTTGCAAGCATACAATCACAACCTCACCTTCCTCACAGTCAAGGGAGCTGGACACACAGTCCCTGAATACAAGCCACGTGAGGCACTGGATTTTTACAGCAGATGGTTGGAAGGGAAATCTATATGA	1197	0.4277	MHAGPFNFEASKTEGNLPTLHLNPYSWSKVSSIIYLDSPAGVGLSYSKNSSKYQTGDLQTASDTHAFLLKWFEEFPEFLDNPFYISGESYAGIYVPTLAYEVVKGIKGGIKPVINFKGYLIGNGVTDIYFDGNAFIPFVHGMGLISDSIYEEVKRSCKGNDDISNLCSKSYDKVYRAVDNLNVYDILEPCYHNPNKASKGNVSLPSSFKELGKTEKPLPVRKRMFGRAWPLRATVKEGPVTLWPQLAEDGHIPCVSDEVATSWLNNQQVRQAIHAQPESVSGPWELCTRRIGYKHDAGSMITYHKKLTIMGYRALIFSGDHDMCVPFTGTEAWTRSLGYKIIDEWRPWTSNDQVAGYLQAYNHNLTFLTVKGAGHTVPEYKPREALDFYSRWLEGKSI	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271925g00001	398	SUPERFAMILY	alpha/beta-Hydrolases	3	396	IPR029058	-
	Stsc271925g00001	398	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	3	382	IPR001563	GO:0004185\|GO:0006508
	Stsc271925g00001	398	Gene3D	alpha/beta hydrolase	1	398	IPR029058	-
	Stsc271925g00001	398	FunFam	Carboxypeptidase	253	397	-	-
	Stsc271925g00001	398	FunFam	Carboxypeptidase	300	395	-	-
	Stsc271925g00001	398	FunFam	Carboxypeptidase	1	211	-	-
	Stsc271925g00001	398	Pfam	Serine carboxypeptidase	3	395	IPR001563	GO:0004185\|GO:0006508
	Stsc271925g00001	398	ProSitePatterns	Serine carboxypeptidases, serine active site.	85	92	IPR018202	GO:0004185
	Stsc271925g00001	398	PRINTS	Carboxypeptidase C serine protease (S10) family signature	71	96	IPR001563	GO:0004185\|GO:0006508
	Stsc271925g00001	398	PRINTS	Carboxypeptidase C serine protease (S10) family signature	36	46	IPR001563	GO:0004185\|GO:0006508
	Stsc271925g00001	398	PRINTS	Carboxypeptidase C serine protease (S10) family signature	23	35	IPR001563	GO:0004185\|GO:0006508
	Stsc271925g00001	398	PRINTS	Carboxypeptidase C serine protease (S10) family signature	365	378	IPR001563	GO:0004185\|GO:0006508
	Stsc271925g00001	398	ProSitePatterns	Serine carboxypeptidases, histidine active site.	365	382	IPR033124	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271925g00001	Stsc-Chr271925	320	4306	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271925g00001	237	398	Calmodulin-binding Proteins	AT2G22960	46.296	8.72e-43	146

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271925g00001	K16296		-	gmx:100790895	650.588