Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271924g00011 ATGGGGTTTGAGAATAATGCAATTAAAGCAGGGAGTTTGGATGTTGGAAAGTCAAAGGGAGGGAAGAAGAAGAAGAAGAAGAATAGAGATGGTGATGAGGGTGGGTGTTGCCTTAGATTGAGTTTCATTGGAAGTTTCATACCTTCAAGATCAAAGGTTGATAACTCCATAAGTGGCACCGCTACTAGTGCTCATAGTGTATATAAAGCATCTGCATATGAGAAAAGCAAAAGAGAAGCAAGTGCTGCACCAGAGTCTTCCACAACAACTAGTAATGCTGGAAGTGTCCCTTCCACTCCGAAGTTCAGCGAGGAGCTCAAGGTTTCTTCTCGGTTGAGAAAATTCACCTTCAATGAGCTTAAGTTGGCAACTAGGAACTTCAAACCAGAGAGTCTTCTTGGCGAGGGAGGGTTCGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAACGGAACTGCACCTGTGAGACCAGGGACCGGTCTTACTGTTGCAGTCAAGACCCTTAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAATTAAACATTCTTGGTGATCTTGTCCATCCTAATCTTGTCAAATTGATTGGTTTCTGCATTGAAGATGACCAAAGATTATTGGTTTACGAGTTTATGCCGCGAGGAAGTTTAGAGAACCATCTCTTTAGAAGGTCTATGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTGCTTTTCTGCATGAAGAAGCTCAGAGGCCCGTAATCTATCGTGATTTCAAGACATCTAACATACTATTAGATGCGGAATACAATGCGAAGCTCTCTGATTTTGGACTCGCTAAAGATGGTCCCGAAGGGGAGAAGACACACATATCTACAAGAGTTATGGGAACATATGGCTATGCTGCTCCTGAGTATGTGATGACGGGACATTTGACGACGAAAAGTGATGTCTATAGTTTCGGAGTAGTGCTACTGGAAATGCTCACTGGCCGGAGATCTATTGATAAGAACAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGACCTTTTATCTTAGACCGAAGAATGTTCTATCGGATAATTGATCATCGCCTTGAAGGCCACTTCTCTATTAAAGGTGCACAAAAAGCCGCCCAGCTAGCAGCTCAGTGCCTTGCCCGCGATCCCAAATCCAGACCTATGATGAGTGAAGTCGTTCAAGTTCTAAAGCCTGTACAGAATCTCAAGGACATGGCCATTGCGTCTCGCCACTTCCAGTTTGTGCGAGTTGACCGTACCATGTCGATGCCGAATCCTAAAAACGGCATGCAGACACAACTAGGATCATTTTCAAGGAAGGGTCAACCTGTAAGGACCTTGTCAAGTCCAAGGGGTCCACCTGGTTCTCCATTTCATCATCATAGCAAGTCTCCAAAACCTAATGGATAA 1443 0.4463 MGFENNAIKAGSLDVGKSKGGKKKKKKNRDGDEGGCCLRLSFIGSFIPSRSKVDNSISGTATSAHSVYKASAYEKSKREASAAPESSTTTSNAGSVPSTPKFSEELKVSSRLRKFTFNELKLATRNFKPESLLGEGGFGCVFKGWIEENGTAPVRPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRSMPLPWSIRMKIALGAAKGLAFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTTKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPFILDRRMFYRIIDHRLEGHFSIKGAQKAAQLAAQCLARDPKSRPMMSEVVQVLKPVQNLKDMAIASRHFQFVRVDRTMSMPNPKNGMQTQLGSFSRKGQPVRTLSSPRGPPGSPFHHHSKSPKPNG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271924g00011 480 CDD STKc_IRAK 133 409 - -
Stsc271924g00011 480 FunFam Probable serine/threonine-protein kinase PBL8 213 426 - -
Stsc271924g00011 480 MobiDBLite consensus disorder prediction 432 480 - -
Stsc271924g00011 480 FunFam Serine/threonine-protein kinase BIK1 94 212 - -
Stsc271924g00011 480 Pfam Protein kinase domain 129 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271924g00011 480 MobiDBLite consensus disorder prediction 435 456 - -
Stsc271924g00011 480 ProSitePatterns Protein kinases ATP-binding region signature. 133 165 IPR017441 GO:0005524
Stsc271924g00011 480 MobiDBLite consensus disorder prediction 82 101 - -
Stsc271924g00011 480 MobiDBLite consensus disorder prediction 1 36 - -
Stsc271924g00011 480 SUPERFAMILY Protein kinase-like (PK-like) 101 407 IPR011009 -
Stsc271924g00011 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Stsc271924g00011 480 Gene3D Phosphorylase Kinase; domain 1 106 212 - -
Stsc271924g00011 480 MobiDBLite consensus disorder prediction 79 101 - -
Stsc271924g00011 480 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271924g00011 480 Gene3D Transferase(Phosphotransferase) domain 1 213 429 - -
Stsc271924g00011 480 PANTHER OS01G0588500 PROTEIN-RELATED 83 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271924g00011 Stsc-Chr271924 56959 60533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271924g00011 113 423 Glycoside Hydrolase AT3G07070 54.459 7.47e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc271924g00011 Pkinase 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271924g00011 - - gmx:100305393 789.645