Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271924g00002 ATGGCAATGGCAACAGAGAATGATGAAGTGATATTGAGCAGGAGAAGAAGAAGAATGATGTCTGGAGAAGAAGGTGAACTCCAAGAAGCAAGGTGTATCAAGAAGCAGAAGCAGCCGCGGCCAGAGCAGCACGAAAATTCTAATGTGATCACTGCTAAGAGAAGTTCAAAATTTCGCGGAGTTAGCAGACATAGATGGACTGGTAGGTTTGAGGCTCATTTATGGGACAAGCTTTCTTGGAATGTCACACAAAAAAAGAAAGGGAAGCAAGGTGCCTATGATGAAGAAGAATCTGCAGCCAGAGCATATGATTTAGCAGCACTTAAGTATTGGGGAACATCAACTTTTACTAATTTTCCGTTCTCAGATTATGAGAAAGAGCTAGAAATAATGCAGACTATGACTAAAGAAGAGTACTTGGCAACTTTAAGGAGGCATCACCAGAATGGAAGATGGGAAGCAAGGATAGGAAGAGTTTTTGGAAACAAATATCTTTACCTTGGAACCTACAGCACACAAGAGGAAGCAGCAAGAGCCTATGACATAGCAGCAATTGAATACAGAGGAATTAATGCTGTAACCAACTTTGATTTAAGTAATTACATAACATGGTTGAAGCCTTCAAACCAAAACTCCCAAGATCCAAAACCTGAGACTCAAGAATTACTGAACTCTCAAACACTCACTTCCCCATCCAACTATACTTCAAATCCAATGCCCTTTGACAGTACCTCTTTCATCACTCTTGATCAATTGAGTTATCCTGAAAATCAAGAAGTCTTTGATAACAAAATGTATCGATTCTCGAGCAGCAAGTCGTCTTCTCCCACGGCTCTTGGCCTTCTCTTTCGCTCTTCGCTTTTTAGGGAATTGGTTGAAAAGAACTCAAACAATGCGTGTGGAGATGAACTTGATGAGGAAGTCACAAAGGATCAACAGCAAAACTTAGTCAGTGATGATGAACTGGGTGGGATCTTGTGTGATGGCAGTGACAGCATTTCACTCTTCTATGATCCAAACAAATACGACTTAGAATTGCAAGAAAGTGATGTCTACTCAATTCTTTGA 1068 0.4054 MAMATENDEVILSRRRRRMMSGEEGELQEARCIKKQKQPRPEQHENSNVITAKRSSKFRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPFSDYEKELEIMQTMTKEEYLATLRRHHQNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSNYITWLKPSNQNSQDPKPETQELLNSQTLTSPSNYTSNPMPFDSTSFITLDQLSYPENQEVFDNKMYRFSSSKSSSPTALGLLFRSSLFRELVEKNSNNACGDELDEEVTKDQQQNLVSDDELGGILCDGSDSISLFYDPNKYDLELQESDVYSIL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271924g00002 355 SUPERFAMILY DNA-binding domain 56 122 IPR016177 GO:0003677
Stsc271924g00002 355 Gene3D AP2/ERF domain 142 199 IPR036955 GO:0003700|GO:0006355
Stsc271924g00002 355 Gene3D AP2/ERF domain 56 121 IPR036955 GO:0003700|GO:0006355
Stsc271924g00002 355 MobiDBLite consensus disorder prediction 19 56 - -
Stsc271924g00002 355 CDD AP2 56 120 IPR001471 GO:0003700|GO:0006355
Stsc271924g00002 355 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Stsc271924g00002 355 PRINTS Ethylene responsive element binding protein signature 179 199 IPR001471 GO:0003700|GO:0006355
Stsc271924g00002 355 ProSiteProfiles AP2/ERF domain profile. 138 197 IPR001471 GO:0003700|GO:0006355
Stsc271924g00002 355 ProSiteProfiles AP2/ERF domain profile. 57 120 IPR001471 GO:0003700|GO:0006355
Stsc271924g00002 355 SMART rav1_2 145 203 IPR001471 GO:0003700|GO:0006355
Stsc271924g00002 355 SMART rav1_2 57 126 IPR001471 GO:0003700|GO:0006355
Stsc271924g00002 355 CDD AP2 145 199 IPR001471 GO:0003700|GO:0006355
Stsc271924g00002 355 Pfam AP2 domain 144 189 IPR001471 GO:0003700|GO:0006355
Stsc271924g00002 355 Pfam AP2 domain 56 112 IPR001471 GO:0003700|GO:0006355
Stsc271924g00002 355 SUPERFAMILY DNA-binding domain 145 199 IPR016177 GO:0003677
Stsc271924g00002 355 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 37 266 - -
Stsc271924g00002 355 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271924g00002 Stsc-Chr271924 3078 5191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271924g00002 25 201 AP2-EREBP Transcription Factor Family AT5G57390 54.902 3.38e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc271924g00002 AP2 8.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271924g00002 - - gmx:100792612 440.654