Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271923g00013 ATGGAGAGCACGCGTAGATCGTTCGATAGATCGAGAGAGCCGGGCGCCAAGAAGCCCCGATTGATCGACGAGCTCGACAGCAAGTCCAACCCCGTTGCCCGACCGTTTTCTCAGCCGCGGCAACCGCCGTCGTCCGCGGTTACAGCGTTGGCTTCCGCCACCGCAAGGTTCCGAACTAACAGCGACAGGAACTCCGAAAGCAGTGATTCGGGTCGGGTAGGGTACCACCCGCAGCCGCCGCCACATCAAGAACTGGTTGCTCAGTACAAGGCCGCGCTAGCTGAGCTCACCTTCAACTCGAAGCCAATAATTACGAACTTGACCATCATTGCTGGAGAGAACCTTTCTGCTGCAAAGGCGATTGCTGGCACCGTTTGTACTAACATTGTAGAGGTTCCAAGTGAACAAAAGCTTCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCCACCAGGCTACCTGAGGTATTCATCAAGACATACAAACAGGTTGATCCACCAGTCCATTCTAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCACAGACCCTTCAGATGATTGAGAAGGAACTTTGCTTCACGCCTGCAGCCAATGGTTCAGTTTCTGCATCTGCTACACTCAGAAGTGAATCACAGGCTCAACGCCCAGCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCACAGTGGTTAAAGGAGTAGCTAATGATACGACTAGAGTTATTTTGAACTCAAATGAGGATCCAGAGAGGCCAAGTAGAGTTTTGGGTGCTTCACGACCGTGGCTAGATCCTAGGATTAACATGCATCGTATTCAAAGAGATGCATACAATGATTCTGTTCCTGAGAAGAGTTTAGCTGAATCCTATCGGAGCATTGAAAATAGTTCAAGTATTGGTTTTACAAATCATGAAGCACCAAAGTCGATGAACTTGGATGCACATCATCAGCCAACACAAAACATAACTAGCATACGGAGCAGTGTATTGGCAGGTAGCTGGAAAAATTCTGAGGAAGAGGAATTCATGTGGGATGAAATGAACTCTGGAATGACTGGTGATGGTGCAGCCAGCGTGGCCAACAACTTGAATACAGAACCATGGATGGGTGGCGATGATGAGAACTTGGATGGAGAAGATCAACCCCAAATCTTGCACGATTTTGGGGAAAAGGTTGATAGAGAAATATCTACTGTGAGGAAACAATCCTTTGCATTTGGGAGGCATTCATCATTGCCATGGAAATTGCAGGAGCAGAGACCGAATGAAAAGTTGAATATGAAGCCAGGTCACTCTGAAGGATATTTGTCCTCTTTAGGTTGCTTACCAGCCAATACAAATTCTTTGGTTGCCAAGATGGCAAATCGGTCTTCCATACCAAATGCAATCATAGGTATGGCTGAAGCTATGGGACAAAAGAATTTTGATTCCATGGGAACAAAACCCACTTCTGTGCAGTCACCTTTGCAGAAGCAGTCTGCATCGCTGCCCTTAACAAAGCACCACCCTCATCCAACACAAAATTTGTTGGAGCAGGCTTCTAAAACATCACAATTTCCAGGAGGTATGCAGAGCCAATATATGAGAGATCAACCACCTGTCCTTCCTTCCAATGCTCAAGTTGGTAGTTTGCTTAGAGCTAGAGAAAAGGATTTGCCTGGTCCTTTATCTTCAGTGACTTATTTTCCGCCAAGGCATCAACAACAGCAGCTGGTCTCATCCCAGACTGAAGTTACTGCAAAAACTAAGAAGCCTCTCCACTCTAAACTCTCTTTGGCCAGTGAAAGCTCAGAACAATCAAAAAGTAGTTTGTCAGCTGCAACTGTGCAGACTAGAGTCCTCAACAAATCAGTTACAAAGAATCTTCCACCCAACATTGGGGTTCGCCCAGTTCTATCAGGTAGACCTTCTCCTGCCACACTAATTTCTTCGGTAGCTGCAGTCGCATCATCTAAATTAGTTCCTCCAAATGAAGATTCTTCTATTCTGGATGAAATATCTCAAGCAAACGGTGGACAGCAACCAAAGGTTTCTACAAAATTGCCAACTTCCTCTAATGTGAGCACTGTGTCAGCTCCAACCTCTGCTGCCACAAAAAATAATTCCTTAAATCCAATTGCAAATCTTTTAAGCTCATTGGTTGCAAAAGGTTTGATATCTGCAGATTCAGAGTCACCGACTAAGATACCAAGTGAGGCCCTGGTTCAATTGGAAGGATGTAATGATAGCATTACCACCAATAGCTCATTGTCAGTTCCTGGTTCTACAGCTCTCCCAGTAACATCCTCTAGAGTTGAGGAAGATGATGCAAACGCTTCCCTTATCTCAACTCAATCAACCAACACCAAAATAAGGGATATCATCGGCTTTGATTTTAAGCCAGATATAGTCCGGGAGATGCATCCTGCCGTAATTAAGGGATTATTGGATGATAGTCAACATCATTGCAAACTTTGTGGTATTAAGCTTGAACAGGAAGAACAGTTCAACAAACACTTGGAGTGGCATTCCACACGAGAAAGAGAGCAAGATGGTCTCATTAGAGCATCCAGAAAATGGTATGGAAATTGGTTTCCATCTGAGCCTAGTGATTCCGTAGACGAATATTATGAGGAAACAGAGAGGAGTTCATTGGATGCTATGGTTCCAGCTGATGAAAGCCAGTGCTTGTGTGTATTGTGTGGCGAGCTGTTTGAAGATGTATACTGTCAAGAGAAGGATGAATGGATGTTCAAAGGTGCTGTTTTCATAAACAACTTAGATAACAACTGTGAAATGGAAAGTAGAAATGTGGGGCCGATTGTTCATGCTAAATGTTTGTCCCAGAACTCAGTATACGATGTCACCAAGATGGAACAGGATTAA 2931 0.4446 MESTRRSFDRSREPGAKKPRLIDELDSKSNPVARPFSQPRQPPSSAVTALASATARFRTNSDRNSESSDSGRVGYHPQPPPHQELVAQYKAALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNIVEVPSEQKLPSLYLLDSIVKNIGRDYIKYFATRLPEVFIKTYKQVDPPVHSSMRHLFGTWKGVFPPQTLQMIEKELCFTPAANGSVSASATLRSESQAQRPAHSIHVNPKYLERQRLQQSSTVVKGVANDTTRVILNSNEDPERPSRVLGASRPWLDPRINMHRIQRDAYNDSVPEKSLAESYRSIENSSSIGFTNHEAPKSMNLDAHHQPTQNITSIRSSVLAGSWKNSEEEEFMWDEMNSGMTGDGAASVANNLNTEPWMGGDDENLDGEDQPQILHDFGEKVDREISTVRKQSFAFGRHSSLPWKLQEQRPNEKLNMKPGHSEGYLSSLGCLPANTNSLVAKMANRSSIPNAIIGMAEAMGQKNFDSMGTKPTSVQSPLQKQSASLPLTKHHPHPTQNLLEQASKTSQFPGGMQSQYMRDQPPVLPSNAQVGSLLRAREKDLPGPLSSVTYFPPRHQQQQLVSSQTEVTAKTKKPLHSKLSLASESSEQSKSSLSAATVQTRVLNKSVTKNLPPNIGVRPVLSGRPSPATLISSVAAVASSKLVPPNEDSSILDEISQANGGQQPKVSTKLPTSSNVSTVSAPTSAATKNNSLNPIANLLSSLVAKGLISADSESPTKIPSEALVQLEGCNDSITTNSSLSVPGSTALPVTSSRVEEDDANASLISTQSTNTKIRDIIGFDFKPDIVREMHPAVIKGLLDDSQHHCKLCGIKLEQEEQFNKHLEWHSTREREQDGLIRASRKWYGNWFPSEPSDSVDEYYEETERSSLDAMVPADESQCLCVLCGELFEDVYCQEKDEWMFKGAVFINNLDNNCEMESRNVGPIVHAKCLSQNSVYDVTKMEQD 976
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc271923g00013 976 Pfam CID domain 90 200 IPR006569 -
Stsc271923g00013 976 MobiDBLite consensus disorder prediction 1 27 - -
Stsc271923g00013 976 ProSiteProfiles CID domain profile. 81 209 IPR006569 -
Stsc271923g00013 976 Gene3D - 78 206 IPR008942 -
Stsc271923g00013 976 MobiDBLite consensus disorder prediction 497 527 - -
Stsc271923g00013 976 ProSitePatterns Zinc finger C2H2 type domain signature. 838 858 IPR013087 -
Stsc271923g00013 976 MobiDBLite consensus disorder prediction 611 630 - -
Stsc271923g00013 976 CDD CID_Pcf11 86 198 IPR047415 -
Stsc271923g00013 976 MobiDBLite consensus disorder prediction 31 72 - -
Stsc271923g00013 976 SUPERFAMILY ENTH/VHS domain 81 210 IPR008942 -
Stsc271923g00013 976 MobiDBLite consensus disorder prediction 597 630 - -
Stsc271923g00013 976 FunFam polyadenylation and cleavage factor homolog 4 78 206 - -
Stsc271923g00013 976 MobiDBLite consensus disorder prediction 1 82 - -
Stsc271923g00013 976 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 60 967 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Stsc271923g00013 976 MobiDBLite consensus disorder prediction 498 527 - -
Stsc271923g00013 976 SMART 558neu5 84 206 IPR006569 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc271923g00013 Stsc-Chr271923 104473 110424 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271923g00013 810 975 C2H2 Transcription Factor Family AT4G04885 31.720 1.10e-26 115
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271923g00013 K14400 - gmx:100788958 1027.31