Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc271923g00013 | ATGGAGAGCACGCGTAGATCGTTCGATAGATCGAGAGAGCCGGGCGCCAAGAAGCCCCGATTGATCGACGAGCTCGACAGCAAGTCCAACCCCGTTGCCCGACCGTTTTCTCAGCCGCGGCAACCGCCGTCGTCCGCGGTTACAGCGTTGGCTTCCGCCACCGCAAGGTTCCGAACTAACAGCGACAGGAACTCCGAAAGCAGTGATTCGGGTCGGGTAGGGTACCACCCGCAGCCGCCGCCACATCAAGAACTGGTTGCTCAGTACAAGGCCGCGCTAGCTGAGCTCACCTTCAACTCGAAGCCAATAATTACGAACTTGACCATCATTGCTGGAGAGAACCTTTCTGCTGCAAAGGCGATTGCTGGCACCGTTTGTACTAACATTGTAGAGGTTCCAAGTGAACAAAAGCTTCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCCACCAGGCTACCTGAGGTATTCATCAAGACATACAAACAGGTTGATCCACCAGTCCATTCTAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCACAGACCCTTCAGATGATTGAGAAGGAACTTTGCTTCACGCCTGCAGCCAATGGTTCAGTTTCTGCATCTGCTACACTCAGAAGTGAATCACAGGCTCAACGCCCAGCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCACAGTGGTTAAAGGAGTAGCTAATGATACGACTAGAGTTATTTTGAACTCAAATGAGGATCCAGAGAGGCCAAGTAGAGTTTTGGGTGCTTCACGACCGTGGCTAGATCCTAGGATTAACATGCATCGTATTCAAAGAGATGCATACAATGATTCTGTTCCTGAGAAGAGTTTAGCTGAATCCTATCGGAGCATTGAAAATAGTTCAAGTATTGGTTTTACAAATCATGAAGCACCAAAGTCGATGAACTTGGATGCACATCATCAGCCAACACAAAACATAACTAGCATACGGAGCAGTGTATTGGCAGGTAGCTGGAAAAATTCTGAGGAAGAGGAATTCATGTGGGATGAAATGAACTCTGGAATGACTGGTGATGGTGCAGCCAGCGTGGCCAACAACTTGAATACAGAACCATGGATGGGTGGCGATGATGAGAACTTGGATGGAGAAGATCAACCCCAAATCTTGCACGATTTTGGGGAAAAGGTTGATAGAGAAATATCTACTGTGAGGAAACAATCCTTTGCATTTGGGAGGCATTCATCATTGCCATGGAAATTGCAGGAGCAGAGACCGAATGAAAAGTTGAATATGAAGCCAGGTCACTCTGAAGGATATTTGTCCTCTTTAGGTTGCTTACCAGCCAATACAAATTCTTTGGTTGCCAAGATGGCAAATCGGTCTTCCATACCAAATGCAATCATAGGTATGGCTGAAGCTATGGGACAAAAGAATTTTGATTCCATGGGAACAAAACCCACTTCTGTGCAGTCACCTTTGCAGAAGCAGTCTGCATCGCTGCCCTTAACAAAGCACCACCCTCATCCAACACAAAATTTGTTGGAGCAGGCTTCTAAAACATCACAATTTCCAGGAGGTATGCAGAGCCAATATATGAGAGATCAACCACCTGTCCTTCCTTCCAATGCTCAAGTTGGTAGTTTGCTTAGAGCTAGAGAAAAGGATTTGCCTGGTCCTTTATCTTCAGTGACTTATTTTCCGCCAAGGCATCAACAACAGCAGCTGGTCTCATCCCAGACTGAAGTTACTGCAAAAACTAAGAAGCCTCTCCACTCTAAACTCTCTTTGGCCAGTGAAAGCTCAGAACAATCAAAAAGTAGTTTGTCAGCTGCAACTGTGCAGACTAGAGTCCTCAACAAATCAGTTACAAAGAATCTTCCACCCAACATTGGGGTTCGCCCAGTTCTATCAGGTAGACCTTCTCCTGCCACACTAATTTCTTCGGTAGCTGCAGTCGCATCATCTAAATTAGTTCCTCCAAATGAAGATTCTTCTATTCTGGATGAAATATCTCAAGCAAACGGTGGACAGCAACCAAAGGTTTCTACAAAATTGCCAACTTCCTCTAATGTGAGCACTGTGTCAGCTCCAACCTCTGCTGCCACAAAAAATAATTCCTTAAATCCAATTGCAAATCTTTTAAGCTCATTGGTTGCAAAAGGTTTGATATCTGCAGATTCAGAGTCACCGACTAAGATACCAAGTGAGGCCCTGGTTCAATTGGAAGGATGTAATGATAGCATTACCACCAATAGCTCATTGTCAGTTCCTGGTTCTACAGCTCTCCCAGTAACATCCTCTAGAGTTGAGGAAGATGATGCAAACGCTTCCCTTATCTCAACTCAATCAACCAACACCAAAATAAGGGATATCATCGGCTTTGATTTTAAGCCAGATATAGTCCGGGAGATGCATCCTGCCGTAATTAAGGGATTATTGGATGATAGTCAACATCATTGCAAACTTTGTGGTATTAAGCTTGAACAGGAAGAACAGTTCAACAAACACTTGGAGTGGCATTCCACACGAGAAAGAGAGCAAGATGGTCTCATTAGAGCATCCAGAAAATGGTATGGAAATTGGTTTCCATCTGAGCCTAGTGATTCCGTAGACGAATATTATGAGGAAACAGAGAGGAGTTCATTGGATGCTATGGTTCCAGCTGATGAAAGCCAGTGCTTGTGTGTATTGTGTGGCGAGCTGTTTGAAGATGTATACTGTCAAGAGAAGGATGAATGGATGTTCAAAGGTGCTGTTTTCATAAACAACTTAGATAACAACTGTGAAATGGAAAGTAGAAATGTGGGGCCGATTGTTCATGCTAAATGTTTGTCCCAGAACTCAGTATACGATGTCACCAAGATGGAACAGGATTAA | 2931 | 0.4446 | MESTRRSFDRSREPGAKKPRLIDELDSKSNPVARPFSQPRQPPSSAVTALASATARFRTNSDRNSESSDSGRVGYHPQPPPHQELVAQYKAALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNIVEVPSEQKLPSLYLLDSIVKNIGRDYIKYFATRLPEVFIKTYKQVDPPVHSSMRHLFGTWKGVFPPQTLQMIEKELCFTPAANGSVSASATLRSESQAQRPAHSIHVNPKYLERQRLQQSSTVVKGVANDTTRVILNSNEDPERPSRVLGASRPWLDPRINMHRIQRDAYNDSVPEKSLAESYRSIENSSSIGFTNHEAPKSMNLDAHHQPTQNITSIRSSVLAGSWKNSEEEEFMWDEMNSGMTGDGAASVANNLNTEPWMGGDDENLDGEDQPQILHDFGEKVDREISTVRKQSFAFGRHSSLPWKLQEQRPNEKLNMKPGHSEGYLSSLGCLPANTNSLVAKMANRSSIPNAIIGMAEAMGQKNFDSMGTKPTSVQSPLQKQSASLPLTKHHPHPTQNLLEQASKTSQFPGGMQSQYMRDQPPVLPSNAQVGSLLRAREKDLPGPLSSVTYFPPRHQQQQLVSSQTEVTAKTKKPLHSKLSLASESSEQSKSSLSAATVQTRVLNKSVTKNLPPNIGVRPVLSGRPSPATLISSVAAVASSKLVPPNEDSSILDEISQANGGQQPKVSTKLPTSSNVSTVSAPTSAATKNNSLNPIANLLSSLVAKGLISADSESPTKIPSEALVQLEGCNDSITTNSSLSVPGSTALPVTSSRVEEDDANASLISTQSTNTKIRDIIGFDFKPDIVREMHPAVIKGLLDDSQHHCKLCGIKLEQEEQFNKHLEWHSTREREQDGLIRASRKWYGNWFPSEPSDSVDEYYEETERSSLDAMVPADESQCLCVLCGELFEDVYCQEKDEWMFKGAVFINNLDNNCEMESRNVGPIVHAKCLSQNSVYDVTKMEQD | 976 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc271923g00013 | 976 | Pfam | CID domain | 90 | 200 | IPR006569 | - | |
Stsc271923g00013 | 976 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Stsc271923g00013 | 976 | ProSiteProfiles | CID domain profile. | 81 | 209 | IPR006569 | - | |
Stsc271923g00013 | 976 | Gene3D | - | 78 | 206 | IPR008942 | - | |
Stsc271923g00013 | 976 | MobiDBLite | consensus disorder prediction | 497 | 527 | - | - | |
Stsc271923g00013 | 976 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 838 | 858 | IPR013087 | - | |
Stsc271923g00013 | 976 | MobiDBLite | consensus disorder prediction | 611 | 630 | - | - | |
Stsc271923g00013 | 976 | CDD | CID_Pcf11 | 86 | 198 | IPR047415 | - | |
Stsc271923g00013 | 976 | MobiDBLite | consensus disorder prediction | 31 | 72 | - | - | |
Stsc271923g00013 | 976 | SUPERFAMILY | ENTH/VHS domain | 81 | 210 | IPR008942 | - | |
Stsc271923g00013 | 976 | MobiDBLite | consensus disorder prediction | 597 | 630 | - | - | |
Stsc271923g00013 | 976 | FunFam | polyadenylation and cleavage factor homolog 4 | 78 | 206 | - | - | |
Stsc271923g00013 | 976 | MobiDBLite | consensus disorder prediction | 1 | 82 | - | - | |
Stsc271923g00013 | 976 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 60 | 967 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Stsc271923g00013 | 976 | MobiDBLite | consensus disorder prediction | 498 | 527 | - | - | |
Stsc271923g00013 | 976 | SMART | 558neu5 | 84 | 206 | IPR006569 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc271923g00013 | Stsc-Chr271923 | 104473 | 110424 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc271923g00013 | 810 | 975 | C2H2 Transcription Factor Family | AT4G04885 | 31.720 | 1.10e-26 | 115 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc271923g00013 | K14400 | - | gmx:100788958 | 1027.31 |