Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271923g00009 ATGGAGTTCTGGGGTGTTGAAGTAAAAAGCGGAGAAACTCTCGAGGTTGATCCAGGATATGGCAAGATTATCCATCTCTCGATGGCATGCCTGGGTGAGGTTAAGAAGGATAAAGGCGAACCAGTAACTGTGTATGTGAAATTCGGTGGCCGGAAGCTTGTGATTGGAACACTTACTTCTGAGAATTTCCCTCAGATATCTTATGATTTAATATTTGAGAAGGAATTTGAGCTATCACATACCTGGAAAAATGGGAGTGTCTTCTTTACTGGATATAAAGCTGAACCTCCGGCGGAATCTGAAAATGAAGAAGACTCTGAAGAGTTCGAAGATATTCCAGTTGCTGCTGCCAACGGAAATTCTGAGCACGAGGGAAATAATGCTGTCAAACTTGATGCCAAGGAAGCTAAACAAAAGGAGAAAATAGGGGATCCAAGAAAGAAAGAGAAGGAAAATGACAACAATGCAAATGATGAAGATGAGGAAGATTCATCTGAACCTGATTCTGAAGAGGATTCTAGTGATGACGAGGCCATGGCAAATGGTGAGGAAGGCGCTGAAGGTGAAGATGACTCTGATGACTCTGATGAGGATGACTCTGATGAATCCGATGAGGAGGAGACACCCAAGAAGGCTGACTTGAATAAAAAGAGGGCTCATGAATCGTCTAAGAAAACACCTCTTCCTGAGAAGAAGACGAAATTTGTTACTCCTGAGAAGATTGAGAACAAGGTTGGTGTTCATGTTGCAACTCCTTACCCCACTAAGCAGGCTATCCAGGCGGCTGCCAATAACAGGCAGCCAGTGAAGCAGCAGACTCCAAAGTCAGTTGGAGACTATGGCTGCAATCCTTGCAACAGGTCTTTTAAGACAGAAGAGGCCTTGAACTCCCATAACAAGGCCAAGCACAGTGGTAAGTGA 921 0.4419 MEFWGVEVKSGETLEVDPGYGKIIHLSMACLGEVKKDKGEPVTVYVKFGGRKLVIGTLTSENFPQISYDLIFEKEFELSHTWKNGSVFFTGYKAEPPAESENEEDSEEFEDIPVAAANGNSEHEGNNAVKLDAKEAKQKEKIGDPRKKEKENDNNANDEDEEDSSEPDSEEDSSDDEAMANGEEGAEGEDDSDDSDEDDSDESDEEETPKKADLNKKRAHESSKKTPLPEKKTKFVTPEKIENKVGVHVATPYPTKQAIQAAANNRQPVKQQTPKSVGDYGCNPCNRSFKTEEALNSHNKAKHSGK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271923g00009 306 Gene3D Nucleoplasmin core domain 1 97 - -
Stsc271923g00009 306 MobiDBLite consensus disorder prediction 127 154 - -
Stsc271923g00009 306 MobiDBLite consensus disorder prediction 260 281 - -
Stsc271923g00009 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 306 IPR013087 -
Stsc271923g00009 306 MobiDBLite consensus disorder prediction 260 279 - -
Stsc271923g00009 306 Pfam Nucleoplasmin-like domain 3 92 IPR041232 -
Stsc271923g00009 306 MobiDBLite consensus disorder prediction 155 206 - -
Stsc271923g00009 306 FunFam Histone deacetylase HDT1 1 98 - -
Stsc271923g00009 306 ProSitePatterns Zinc finger C2H2 type domain signature. 282 303 IPR013087 -
Stsc271923g00009 306 MobiDBLite consensus disorder prediction 207 239 - -
Stsc271923g00009 306 MobiDBLite consensus disorder prediction 117 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271923g00009 Stsc-Chr271923 71184 74757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271923g00009 1 305 C2H2 Transcription Factor Family AT5G03740 35.783 4.65e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc271923g00009 NPL 2.5e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271923g00009 - - ccaj:109796568 330.487