Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271922g00013 ATGATGAAGAATACCATATCTTCTTCTCTTACTCACAAACTCTCTCTTCTTCTTCTTCTTTCATTTCTGGCATCATCTTCATTTGTTCTTACTACTACAACCACAACTACTGTTTCAATCAAAGATACAATTTTGGAGCCTTTCAAGTGCTCCACAACCATAAAAACATGCAATGCCTCACTCTACCACATAACCTATGATGATAATGATGATGTTAATCACATATCTTCCAATTACACAAACTCCTCAGAAATCAAACCAATCACACGTGGCACAAAACAAGACCACCTCATAACAGTGCCTTGTTCATGCAGAAACAGCAACAACCTCACTGGTTATTACTATGACACAACCTACACTGTGAAGCCCAATGACAATTTCTATGACATTAATAACTTGGTTTACAGTGGTCAAGCCGTGCATATTGATGGTGTTCTTCACCCGGGTCAGAATCTGAGTATTCATATTCCATGTGGGTGTTCATCAGAGATTGAGTCAGAAATTGTTGTGACTTACACGGTTCAAAGGAATGATACCACTTATGGAATAGCTACGCTTTTGAATTCTACGGTTTCTGAGATGGAGAGTGTCAATCATTTTCTGGTTCAGAACCCAGCATACATAGAACCGGGTTGGGTTTTATTTGTTCCTAGCCAGTTTAATGGAATTCCACTGCCTCCAACACAAGAAAAGAAGCCAAAGTGGCAGATAATCATTGGCGTCTTAGCGGCTGTGACATTACTTTCAGTGATTGCTGTCATCTTTCTCATTCTCAGGAGAAGTAGATCTAAGGCAGCATCTGCCATTGATAATCCAAATAGTGTCTCTAAAAGATCCATTTCCAAAAAGAATTCTGACATTCATAACAAAGATTACATACAAGATGCAACATCATTTGATTCAGAAAGACCAGTAATTTACTCTATAGAGGAGATAGAAGCTGCTACAAATAACTTTGATGAAAACAGAAGAATTGGAGTTGGTGGGTATGGCAGTGTCTATTTTGGAATGTTAGACCACAAGGAGGTTGCTGTAAAGAAGATGAAGTCCAATAAATCCAAAGAATTCTTTGCAGAACTCAAGGCCTTATGTAAAATCCATCACATAAACATTGTGGAGTTGTTGGGGTATGCAAGTGGAGATGACCACCTTTATTTAGTATATGAGTATGTTGCAAATGGATCTCTCAGTGATCATCTTCATGATCCTTTACTTAAAGGGCATCAGGTTCTATCTTGGTGTGCTAGGACTCAGATTGCCCTGGATGCAGCGAAAGGAATTGAATACATACATGATTACACAAAAGCCCAGTATGTCCACCGTGATATCAAGACTACTAACATTCTTCTTGATCAGAAACTCAGAGCCAAGGTAGCTGATTTTGGGCTTGCAAAGTTGGTAGAAAGGACCAATGATGAAGAATTCATTGCAACAAGGCTTGTTGGAACACCGGGCTACCTTCCACCAGAATCGGTGAAAGAGTTACAAGTCACGACAAAAACTGATGTGTTTGCATTTGGAGTAGTTCTGTCAGAGCTGATAACAGGAAAACGTGCGCTATTTCGTGACACCCAACAACCCAACCACACCCACTCACTTATTTCACTTGTTAAGAAAATATTCCAAGATAGTGACCCTGTGAGTGCTTTAGAAAATGTGACAGATGTGAATCTCCAACATAACTATCCCATAGACGCTATGTATAAGATGGCAGAAGTAGCAGAGAGGTGCTTGAGAGAGGAACCAATGGAGAGGCCTGAAATGAAGGAGATGGTGGGGGCGCTGTCACAGATAGTTATCAGTTCCATAGAGTGGGAAGCATCACTCGGAGGAGATAGCCAAGTTTTCAGCGGCGTTTTCATTGGAAGATAA 1872 0.4022 MMKNTISSSLTHKLSLLLLLSFLASSSFVLTTTTTTTVSIKDTILEPFKCSTTIKTCNASLYHITYDDNDDVNHISSNYTNSSEIKPITRGTKQDHLITVPCSCRNSNNLTGYYYDTTYTVKPNDNFYDINNLVYSGQAVHIDGVLHPGQNLSIHIPCGCSSEIESEIVVTYTVQRNDTTYGIATLLNSTVSEMESVNHFLVQNPAYIEPGWVLFVPSQFNGIPLPPTQEKKPKWQIIIGVLAAVTLLSVIAVIFLILRRSRSKAASAIDNPNSVSKRSISKKNSDIHNKDYIQDATSFDSERPVIYSIEEIEAATNNFDENRRIGVGGYGSVYFGMLDHKEVAVKKMKSNKSKEFFAELKALCKIHHINIVELLGYASGDDHLYLVYEYVANGSLSDHLHDPLLKGHQVLSWCARTQIALDAAKGIEYIHDYTKAQYVHRDIKTTNILLDQKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTTKTDVFAFGVVLSELITGKRALFRDTQQPNHTHSLISLVKKIFQDSDPVSALENVTDVNLQHNYPIDAMYKMAEVAERCLREEPMERPEMKEMVGALSQIVISSIEWEASLGGDSQVFSGVFIGR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271922g00013 623 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 34 619 IPR044812 GO:0019199|GO:0045087
Stsc271922g00013 623 SMART serkin_6 319 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271922g00013 623 ProSiteProfiles Protein kinase domain profile. 319 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271922g00013 623 FunFam Kinase family protein 294 390 - -
Stsc271922g00013 623 CDD LysM 170 216 IPR018392 -
Stsc271922g00013 623 SUPERFAMILY LysM domain 170 217 IPR036779 -
Stsc271922g00013 623 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Stsc271922g00013 623 FunFam PTI1-like tyrosine-protein kinase 3 391 609 - -
Stsc271922g00013 623 SMART LysM_2 171 217 IPR018392 -
Stsc271922g00013 623 Gene3D LysM domain 162 222 IPR036779 -
Stsc271922g00013 623 SUPERFAMILY Protein kinase-like (PK-like) 303 595 IPR011009 -
Stsc271922g00013 623 Gene3D Phosphorylase Kinase; domain 1 297 390 - -
Stsc271922g00013 623 Pfam LysM domain 172 217 IPR018392 -
Stsc271922g00013 623 PIRSF TyrPK_CSF1-R 557 610 - -
Stsc271922g00013 623 PIRSF TyrPK_CSF1-R 323 406 - -
Stsc271922g00013 623 PIRSF TyrPK_CSF1-R 410 519 - -
Stsc271922g00013 623 PIRSF TyrPK_CSF1-R 4 140 - -
Stsc271922g00013 623 PIRSF TyrPK_CSF1-R 225 260 - -
Stsc271922g00013 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Stsc271922g00013 623 Gene3D Transferase(Phosphotransferase) domain 1 391 607 - -
Stsc271922g00013 623 Pfam Protein kinase domain 320 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271922g00013 623 ProSiteProfiles LysM domain profile. 170 216 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271922g00013 Stsc-Chr271922 84750 88188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271922g00013 299 623 Receptor kinase-like Gene Family AT1G51940 52.568 5.73e-117 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc271922g00013 Pkinase 2.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271922g00013 - - gmx:100800907 798.505