Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271922g00003 ATGGCGGCCGCCGCGTCGTCGGAGCAGCAGCAACAGCATCATCAAGAGAAGCGAATCGAGGACGAGCTCTCCTACCCGATCACGGTGGCGGAGCGAGTTCGCTCGGCGGCTGACGAGGCCGACTCCTTCAAGGCCGACTGCTCCGAGGTCTGGAAACAGGTCGACCGTCTCCTCCAGATGCTCCGCTCACTCGTCCGCTTCGCCACCTCCGCCGCCTCCTCCTCCGGCGGTCCGCCTCTCTACGAGCGCCCCGTCCGCCGTGTCGTCGCCGAAGTCTCCAAGAACCTCGACCGCGCTCTCTCCCTCCTCCGCAAGTGCAAGCGCCGCTCAATCCTCCGCCGCGTCGTCACCATCGTCTCCGCCACGGACTTCCGCAAGGTCCTCGCCTACCTCGACGCCTCCGTTGGAGACATGCGATGGCTCCTCTCCATCCTCGACGCCGACGGGTCCGCGGCGGCCGCAGGCGGAGGTGGCGGCATCGTGCTCTCGCTCCCTCCGATCGCCAGCAACGATCCCATTCTATCTTGGGTATGGTCTTTCATTGCTTGTGTTCAAATGGGTCAATTGAACGATAGGGTAGAAGCCGCTAATGAACTTGCTTCGCTTGCGATTGATAACGATAGGAACAAGAAGATCATTGTTGAGGAAGGTGGGGTTCCACCTTTGTTGAAGCTCTTGAAAGAGACTTCTTCCCCTGTGGCGCAAATTGCTGCTGCTACCGCCTTGTGTAACTTGGCTAATGATTTGGACAGGGTAAGGGTCATTGTGAGTGAGCTTGGTGTCCCTATTGTTGTGCAGGTTCTTGCTGATTCTCCCATGAGGGTCCAGACGAAGGCCGCTGAATTGGTTGCCCGGATGGCCCAGCATGACCCTGCTGGGCAGGAGGATTTTGCCCGGGAGAACGCCATTAGGCCTCTTGTTACACTCTTGTCGTTTGATACATTCGTCGATGATCCTATGGGCCAATTGGGCAGGCAGAGTATCCATTCCCTTGTTCAGATTAATAAGGAATTGGGGAAGAAGACGGCTCTAATGGCTAGGTCTGGTAATCGGCCGTTGACGAATTCTTTCTCGAGTTTTTCGCATTCGGAGGGAAGTAGCAGAGCTGGTAATCACAGGAAAGAGAGGGAGAATGAGGACCCTACCGTAAAGCTTCAGCTAAAGATTAGTTGCGCGGAAGCCTTGTGGATGCTTGCGAGAGGAAGCGTGACCAATAGTAGGAAGATAACCGAAACCAAAGGGATGCTTTGTTTAGCTAAGCTTGTTGAGAAGGAACAAGGGCAGCTGCAGTATAATTGCTTGATGACGATTATGGAGATAACGGCTGCAGCTGAGTCCAATGCTGATCTTCGTCGTGCAGCATTCAAGACTAACTCTCCTGCTGCTAAGGCTGTGGTGGAACAACTCTTGAGGATAATTAAGGAGGTGGACAGCCCGTCATTGCAAATTCCAGCCATAAAGTCGATTGGTTCATTAGCCAGGACATTTCCTGCTAGAGAGACTAGAGTAATCGGTCCCCTGGTAACGCAGCTGAGTCACAGAGACACAGATGTAGCGGCCGAAGCAGCCATTGCTCTTAACAAGTTTGCTTGTCCAGATAATTTCCTACATGTGGAGCACTCAAAGGCCATAATTGAGTTCAATGGAGTCCCGGCACTAATGAGACTGCTAAGGGCCAATGAAGTTGCCCAATTGCATGGACTAATTCTCCTATGCTACCTTGCACTACATGCTGGTAACAGCGAATCGTTGGAACAAGCAAGGGTCTTGACAGCTCTAGAGGGCGCAGATCGAACTGTTATAGCACAGCATCCTGAGATAAGAGATTTGGTGTCTAGGGCATTAATCCACCTCAATCTGTATCATGCAGGGATGAATTCTCAAAGGATAACATATACTCTTTAG 1905 0.5291 MAAAASSEQQQQHHQEKRIEDELSYPITVAERVRSAADEADSFKADCSEVWKQVDRLLQMLRSLVRFATSAASSSGGPPLYERPVRRVVAEVSKNLDRALSLLRKCKRRSILRRVVTIVSATDFRKVLAYLDASVGDMRWLLSILDADGSAAAAGGGGGIVLSLPPIASNDPILSWVWSFIACVQMGQLNDRVEAANELASLAIDNDRNKKIIVEEGGVPPLLKLLKETSSPVAQIAAATALCNLANDLDRVRVIVSELGVPIVVQVLADSPMRVQTKAAELVARMAQHDPAGQEDFARENAIRPLVTLLSFDTFVDDPMGQLGRQSIHSLVQINKELGKKTALMARSGNRPLTNSFSSFSHSEGSSRAGNHRKERENEDPTVKLQLKISCAEALWMLARGSVTNSRKITETKGMLCLAKLVEKEQGQLQYNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVEQLLRIIKEVDSPSLQIPAIKSIGSLARTFPARETRVIGPLVTQLSHRDTDVAAEAAIALNKFACPDNFLHVEHSKAIIEFNGVPALMRLLRANEVAQLHGLILLCYLALHAGNSESLEQARVLTALEGADRTVIAQHPEIRDLVSRALIHLNLYHAGMNSQRITYTL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271922g00003 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 217 260 IPR000225 GO:0005515
Stsc271922g00003 634 MobiDBLite consensus disorder prediction 1 22 - -
Stsc271922g00003 634 Gene3D - 21 144 IPR036537 GO:0007166
Stsc271922g00003 634 Gene3D - 183 343 IPR011989 -
Stsc271922g00003 634 MobiDBLite consensus disorder prediction 367 382 - -
Stsc271922g00003 634 SMART arm_5 248 288 IPR000225 GO:0005515
Stsc271922g00003 634 SMART arm_5 537 576 IPR000225 GO:0005515
Stsc271922g00003 634 SMART arm_5 205 247 IPR000225 GO:0005515
Stsc271922g00003 634 MobiDBLite consensus disorder prediction 349 382 - -
Stsc271922g00003 634 MobiDBLite consensus disorder prediction 349 366 - -
Stsc271922g00003 634 Pfam Armadillo/beta-catenin-like repeat 206 246 IPR000225 GO:0005515
Stsc271922g00003 634 Gene3D - 374 620 IPR011989 -
Stsc271922g00003 634 SUPERFAMILY ARM repeat 188 618 IPR016024 -
Stsc271922g00003 634 PANTHER ARMADILLO REPEAT ONLY 4 18 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271922g00003 Stsc-Chr271922 25827 28299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271922g00003 187 309 U-box Gene Family AT5G67340 30.081 5.65e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271922g00003 - - gmx:100779659 911.753