Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271920g00022 ATGAACGAAGGGGAGCAACTATGCCACGCCGCCAGGAACGGCGACGCCGAAAAGGTGAAGTCCCTGATAGACTCCGGCGCCGACGTGAGCCACTTCGACGCAGAGGGCCGCACTCCTCTTATGCACGCTGCAAAGCAAGGGCACGCATCTATCCTCGCCATCCTTCTCTCTGCTGGCGCCCCATGGAACGCCCTCTCTCCTTCCAACCTCTCCGCCGGTGACTTCGCCATGGAAGCAGGCCATCAGGACGCCTACGAGCTCCTCCTCAATGCCGGGATTCAGGCTGAACTTGTCTTGGGTACAATTGCAAGAAAAGAAAATAAAAATGCCGATTCTGGTCATGATTACTTGGAAGATAGGGTCAATTTCAGCGAAGACAAAATTATGGACGCTGATAGCAAGGCTGTGATGATGGCATGGGAGAAGCCTTTGATGGAGGCTCATGCTAAAGCTGTTTGTTCGGGTGGTGGTCACATACTTAATATTGGATTCGGAATGGGTCTTGTCGATACCGCCATTCAGCAGTATGCCCCTGCCACTCACACCATTGTCGAGGCTCATCCCGAGGTTTATGAACGCATGCTTCGCACCGGTTGGGGGAAGAAGGAAAATGTGAAGATTGTTTTTGGTCGCTGGCAAGATGTTCTGTCTCAGCTTGAAACATATGATGGAATTTTCTTTGATACCTATGGGGAGTACTATGAAGACCTGAGAGAGTTCCACCAACATCTTCCTGCACTGTTGAAGCCAGGTGGGATCTATTCATTCTTCAATGGTCTTTGTGGTGGTAACGCATTTTTCCATGTTGTGTATTGCCATTTGGTATCTCTTGAGCTTGAGAATTTGGGGTATTCCACACAGTTGATTCCATTGCCTGTTAAGGATTGTTTGGGAGAAGAAGTTTGGGAAGGTGTAAAACACAGATACTGGCAGCTTGATACATACTATCTCCCTGTCTGTCAGTCTTTAGAGGAAAACGAGTGA 984 0.4909 MNEGEQLCHAARNGDAEKVKSLIDSGADVSHFDAEGRTPLMHAAKQGHASILAILLSAGAPWNALSPSNLSAGDFAMEAGHQDAYELLLNAGIQAELVLGTIARKENKNADSGHDYLEDRVNFSEDKIMDADSKAVMMAWEKPLMEAHAKAVCSGGGHILNIGFGMGLVDTAIQQYAPATHTIVEAHPEVYERMLRTGWGKKENVKIVFGRWQDVLSQLETYDGIFFDTYGEYYEDLREFHQHLPALLKPGGIYSFFNGLCGGNAFFHVVYCHLVSLELENLGYSTQLIPLPVKDCLGEEVWEGVKHRYWQLDTYYLPVCQSLEENE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271920g00022 327 ProSiteProfiles Ankyrin repeat profile. 35 67 IPR002110 GO:0005515
Stsc271920g00022 327 PIRSF Rmt2 1 115 IPR017408 GO:0016274
Stsc271920g00022 327 PIRSF Rmt2 103 324 IPR017408 GO:0016274
Stsc271920g00022 327 Pfam Ankyrin repeats (3 copies) 7 94 IPR002110 GO:0005515
Stsc271920g00022 327 CDD AdoMet_MTases 159 254 - -
Stsc271920g00022 327 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 320 IPR029063 -
Stsc271920g00022 327 PANTHER GUANIDINOACETATE N-METHYLTRANSFERASE 10 322 - -
Stsc271920g00022 327 FunFam Protein arginine N-methyltransferase 2 1 100 - -
Stsc271920g00022 327 Gene3D - 2 98 IPR036770 -
Stsc271920g00022 327 FunFam Arginine N-methyltransferase 2 103 322 - -
Stsc271920g00022 327 Gene3D Vaccinia Virus protein VP39 102 322 IPR029063 -
Stsc271920g00022 327 ProSiteProfiles Arginine and arginine-like N-methyltransferase domain profile. 109 327 IPR026480 -
Stsc271920g00022 327 SMART ANK_2a 35 64 IPR002110 GO:0005515
Stsc271920g00022 327 SMART ANK_2a 68 97 IPR002110 GO:0005515
Stsc271920g00022 327 SMART ANK_2a 2 31 IPR002110 GO:0005515
Stsc271920g00022 327 ProSiteProfiles Ankyrin repeat region circular profile. 35 60 - -
Stsc271920g00022 327 SUPERFAMILY Ankyrin repeat 7 95 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271920g00022 Stsc-Chr271920 125836 127442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271920g00022 6 95 MAP Kinase Kinase Kinase AT2G31800 34.444 1.26e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271920g00022 K18477 - gmx:100527621 592.423