Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271920g00017 ATGGCACTAGAAGCTCTGAAATCACCAACTGCAGCAGGACCTTCCTTCAGCTTTGAAGAAACTAACAATCTGAGCTACATGGAAGCACCTTGGGCTAAGAGAAAACGTTCAAAGCGTGCTAACAGAATAATGGAACCCAATAACCACCCTAACTGCTCCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCACCACCACCATCCCCATATGTCATTCCTCTCCTGCTCCTCCATCTCTTCAAGAGTCGAAGCCAATTCCCACGGCCACCGCCACCGCCACTCCCACTCTCACCTACAAGTGCTCTGTCTGCAACAAAGCGTTCTCATCTTATCAAGCACTTGGCGGACACAAGGCCAGCCACCGCAAGCTCGCTGCTGGAACCCTCGGCGGCGAAGAGCATCACTCCACTACCTCCGCCGTCACCACCAGTTCCGCTTCCGCTGCATCCAACGGCGGAGGCAAGTCTCACGAGTGTTCCATCTGCCACAAGTCTTTCCCAACCGGACAGGCCTTGGGAGGACACAAGCGTTGCCACTACGACGGAGGCGCGGCCGCATCTGCATCCGCATCCGCCGCTGCTGGCAGTGCCGTAACCGCCTCAGAAGGAGTTGGATCCACCGTTAGCCACCGCGACTTCGATCTGAACCTCCCTGCTTTCCCGGACTTTCCCAACAAGTTCTTCGTGGAGGACGAGGTTTCCAGCCCTCTGCCGACGAAGAAGCCCCGTCTCTTGACCCTACCGAAGATTGAAATCCCTCACTTCCATTGA 783 0.5632 MALEALKSPTAAGPSFSFEETNNLSYMEAPWAKRKRSKRANRIMEPNNHPNCSEEEYLALCLIMLARGTTTIPICHSSPAPPSLQESKPIPTATATATPTLTYKCSVCNKAFSSYQALGGHKASHRKLAAGTLGGEEHHSTTSAVTTSSASAASNGGGKSHECSICHKSFPTGQALGGHKRCHYDGGAAASASASAAAGSAVTASEGVGSTVSHRDFDLNLPAFPDFPNKFFVEDEVSSPLPTKKPRLLTLPKIEIPHFH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271920g00017 260 Gene3D Classic Zinc Finger 101 183 - -
Stsc271920g00017 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 125 IPR013087 -
Stsc271920g00017 260 ProSitePatterns Zinc finger C2H2 type domain signature. 163 183 IPR013087 -
Stsc271920g00017 260 SMART c2h2final6 161 183 IPR013087 -
Stsc271920g00017 260 SMART c2h2final6 103 125 IPR013087 -
Stsc271920g00017 260 MobiDBLite consensus disorder prediction 132 153 - -
Stsc271920g00017 260 Pfam C2H2-type zinc finger 161 185 - -
Stsc271920g00017 260 Pfam C2H2-type zinc finger 103 127 - -
Stsc271920g00017 260 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Stsc271920g00017 260 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 223 IPR044653 GO:0003700
Stsc271920g00017 260 MobiDBLite consensus disorder prediction 136 153 - -
Stsc271920g00017 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 183 IPR013087 -
Stsc271920g00017 260 SUPERFAMILY beta-beta-alpha zinc fingers 102 183 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271920g00017 Stsc-Chr271920 100752 102420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271920g00017 1 256 C2H2 Transcription Factor Family AT1G27730 44.656 5.23e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc271920g00017 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271920g00017 - - gmx:100776038 270.781