Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271920g00013 ATGGAATCTGTTGATGTAGGAGCCTTCCCTGAAGGAGAATGGGATTGTTTTTACCCAATATTTTCAATTGAAGAAGACAGAAACACAGAGATTGAATCAATGTTTTCTCCCACTCCTAATTTTCAGTATATTTGTCAAGAGAGTAGTAATAGTAGTAGCTATACTGTGTTTATGGCCAATGATCCTGAACATTCTGTGCTACCAAATGATAATGATTTTAACTTTCACATGATGATGATGATGAAAAATGAGAAAAGCCTTGTTCCTTCTTCACAAGTCATAGTGAATGAAGATGATGAGACAAGTGATCCGTCACAGAATTCTGATGTCCTCAAAAGAAATCCTGAATTGCCACTGCCAGATAAGAAGAAAAAGGCTCGTGTTTCAAAAGATAGGAGAAGAGAAAGGATAAATGAGAGACTACGAACTCTACAAAGTCTTGTTCCCAATGGAACAAAGGTTGATATAAGCACAATGCTAGAAGAGGCAGTGCACTACGTGAAATTTTTGCAGTTACAGATCAAGCTTTTGAGCTCTGATGATATGTGGATGTACGCTCCCATAGCTTATAATGGATTTGACATTGGACTCAATCTATCTCCTCAACAACATTAA 615 0.3707 MESVDVGAFPEGEWDCFYPIFSIEEDRNTEIESMFSPTPNFQYICQESSNSSSYTVFMANDPEHSVLPNDNDFNFHMMMMMKNEKSLVPSSQVIVNEDDETSDPSQNSDVLKRNPELPLPDKKKKARVSKDRRRERINERLRTLQSLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDMWMYAPIAYNGFDIGLNLSPQQH 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271920g00013 204 MobiDBLite consensus disorder prediction 97 112 - -
Stsc271920g00013 204 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 50 193 - -
Stsc271920g00013 204 FunFam Basic helix-loop-helix transcription factor 122 179 - -
Stsc271920g00013 204 SMART finulus 128 176 IPR011598 GO:0046983
Stsc271920g00013 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Stsc271920g00013 204 Pfam Helix-loop-helix DNA-binding domain 132 171 IPR011598 GO:0046983
Stsc271920g00013 204 MobiDBLite consensus disorder prediction 97 136 - -
Stsc271920g00013 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 188 IPR036638 GO:0046983
Stsc271920g00013 204 CDD bHLH_AtIND_like 132 184 - -
Stsc271920g00013 204 Gene3D - 120 178 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271920g00013 Stsc-Chr271920 78046 79347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271920g00013 132 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 89.706 1.50e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271920g00013 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271920g00013 - - aip:107607960 199.519