Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271920g00012 ATGGAAACTGATATTCCGCTGCCCAATTACAGTTACATGGGCAGGACTCTGCCTCAACTCCCCCTCACCGATCATTCCTCTTCCGCTTTCAGCGACTGCAACAGCGACATATCCGGCGAATTCACCACCACTTCCTCCCAAGCACGCCGCCTCCTTATTGCCTGCGCCTCCGACAACTCCGACGAACTCATCACTCACCTCGTCACCGAACTCCAATCCTCTTCCATCGAAGACCAAAAACAAGCCGCCATGGAGATCAGACTTCTCGCCAAGAACAAGCCCGAGAACCGCCTCAAGATCGCCAAAGCCGGCGCCATCAAACCTTTAATCTCCCTCGTTTCTTCTCAGGATCTTCAGCTTCAGGAATACGGCGTCACCGCCATTCTCAATCTCTCTCTCTGCGACGAGAATAAAGACGCCATCGCTTCTTCCGGAGCGATTAAGCCTCTTGTTCGTGCACTCAAGACGGGGACTCCGGCGGCCAAAGAGAACGCTGCCTGCGCTCTCCTCCGCCTCTCGCAGATGGAAGAGAACAAGGTGGCGATAGGGAAGTGCGGTGCGATTCCACCGCTGGTGAGCCTTCTAGAAAGCGGTGGATTACGAGCGAAGAAAGACGCGTCGACGGCGCTGTACTCGCTGTGCTCGACGGTGAAGGAGAACAAGATCAGGGCGGTGAGGACGGGGATCATGAAGGCGCTGGTGGAGCTCATGGCGGACTTGGGAGGGAACATGGTGGACAAGTCTGCGTATGTGGCGAGCGTTCTGATGTCGGTGACGGAGGCGAGGACGGCGCTGGTAGATGAAGGAGGGATACCGGTGTTGGTGGAGATGGTGGAGGTTGGGACGCAGAGGCAGAAGGAGATCGCGGTGGTGATTCTGTTGCAGGTGTGCGAGGAGAGCGCGGCTTACCGTAAGATGGTGGCGCGCGAAGGTGCGATTCCTCCTCTGGTTGCTCTGTCTCAGAACGGCACCAACCGCGCCAAGCAAAAGGCGGAGACACTGATAGAACTTCTACGGCAACCAAGATCCGGCAACGCCGCTGTATAA 1047 0.5692 METDIPLPNYSYMGRTLPQLPLTDHSSSAFSDCNSDISGEFTTTSSQARRLLIACASDNSDELITHLVTELQSSSIEDQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLISLVSSQDLQLQEYGVTAILNLSLCDENKDAIASSGAIKPLVRALKTGTPAAKENAACALLRLSQMEENKVAIGKCGAIPPLVSLLESGGLRAKKDASTALYSLCSTVKENKIRAVRTGIMKALVELMADLGGNMVDKSAYVASVLMSVTEARTALVDEGGIPVLVEMVEVGTQRQKEIAVVILLQVCEESAAYRKMVAREGAIPPLVALSQNGTNRAKQKAETLIELLRQPRSGNAAV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271920g00012 348 PANTHER U BOX DOMAIN-CONTAINING 63 339 - -
Stsc271920g00012 348 Pfam Armadillo/beta-catenin-like repeat 176 215 IPR000225 GO:0005515
Stsc271920g00012 348 Pfam Armadillo/beta-catenin-like repeat 135 173 IPR000225 GO:0005515
Stsc271920g00012 348 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Stsc271920g00012 348 SUPERFAMILY ARM repeat 61 335 IPR016024 -
Stsc271920g00012 348 FunFam RING-type E3 ubiquitin transferase 53 344 - -
Stsc271920g00012 348 Gene3D - 248 340 IPR011989 -
Stsc271920g00012 348 Gene3D - 39 247 IPR011989 -
Stsc271920g00012 348 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Stsc271920g00012 348 SMART arm_5 134 174 IPR000225 GO:0005515
Stsc271920g00012 348 SMART arm_5 175 215 IPR000225 GO:0005515
Stsc271920g00012 348 SMART arm_5 93 133 IPR000225 GO:0005515
Stsc271920g00012 348 SMART arm_5 257 298 IPR000225 GO:0005515
Stsc271920g00012 348 SMART arm_5 300 340 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271920g00012 Stsc-Chr271920 74045 75961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271920g00012 64 347 U-box Gene Family AT2G23140 50.352 6.14e-83 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271920g00012 - - gmx:100797550 523.087