Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271920g00011 ATGCTCGTGACAACTGTTGGAATGAGAACCCAGTGGGGTAAACTAATGGCTACTCTAAGTGAAGGGGGAGATGATGAAACTCCACTGCAGGTTAAACTCAATGGTGTAGCTACTATTATTGGGAAAATAGGCCTTTTCTTTGCCGTTGTGACTTTTTCTGTGTTAGTCCAAGGACTGGTCAGCCGCAAGCTGCGAGAAGGGTCCCAGTGGACGTGGTCTGGTGATGATGCCATGGAAATTGTAGAGTTCTTTGCTATTGCGGTTACTATTGTTGTCGTTGCTGTCCCAGAAGGTTTACCTTTAGCTGTTACATTGAGCCTTGCTTTTGCAATGAAAAAGATGATGAACGATAAGGCACTTGTTCGTAATTTGGCTGCTTGTGAGACAATGGGCTCTGCCACCACTATCTGCAGTGACAAGACTGGCACGCTGACTACTAACCATATGACTGTTGTAAAAGCTTGCATATGTGGGAAGATTAAAGAAGTAAAGGGCTCTAACGTGTCTTCTGATTTCTCATCTGATATTCCTGATTCTGCATTGGCAATTCTACTTCAATCAATATTTAACAACACTGGAGGAGAAGTTGTAAAAAACATGAATGAGAAGGTTGAGATTCTGGGATCACCAACAGAGACTGCTCTCTTGGAATTTGGGCTGTCACTTGGAGGTGATTTCCAAAAGGAGCGACAAGCAGTGAAACTTGTGAAAGTTGAACCGTTTAACTCTTTGAAGAAGCGCATGGGAGTGGTTCTACAGCTTCCTGAAGGTGGCTTCAGAGCACATTGTAAAGGTGCCTCTGAAATAATTCTAGCTGCATGTGAAAAAGTTGTAGACCCAAATGGTGAGGTGGTTCCCCTTGAAGAAGACTCTATTAATTACTTGAAGGATACAATAAACAAATTTGCTGATGAAGCTCTCCGAACCCTTTGCCTTGCATATGTGGATATCGGTGATCAATTCTCAGTTGAAACTCCTATCCCTAATAGAGGTTACACATGTATAGGAATTGTGGGTATTAAAGATCCTGTTCGTCCTGGAGTTCGAGAGTCTGTTGCCATTTGTAGGTCGGCTGGTGTTACTGTTAGGATGGTTACTGGAGACAACATAAACACTGCAAAGGCTATTGCTAGAGAATGTGGAATTTTAACGGATGGAATTGCAATTGAAGGCCCTGAGTTTCGTGAAAAGAGTGAGGAAGAATTGCTTAAAATAATTCCAAAACTTCAGGTGATGGCTCGATCTTCTCCCATGGATAAGCATACCCTGGTGAAACAATTGAGGACAACATTTGAAGAGGTTGTTTCAGTTACTGGTGATGGTACAAATGACGCTCCTGCACTTCATGAAGCAGATATTGGGCTTGCAATGGGCATTTCCGGGACTGAGGTAGCAAAAGAAAGTGCCGATGTCATAATACTGGATGATAATTTCTCAACTATTGTGACTGTGGCCAAATGGGGCCGATCTGTCTACATAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAACATTGTTGCTTTGATTGTCAACTTCTCTTCTGCCTGTTTGACTGGAAATGCTCCTCTCACTGCTGTTCAACTTCTATGGGTCAACATGATTATGGACACTCTTGGAGCACTTGCTCTAGCCACTGAACCTCCTACTGATGATTTGATGAAAAGACCACCTGTCGGTCGGAAAGGAAACTTCATCAGTAATGTGATGTGGAGGAATATCTTGGGGCAGTCTATATATCAATTTGCTGTACTTTGGTTCCTCCAGACAAGAGGAAAAGCAGCTTTTCATCTTGATGGCCCAGATTCGGAATTGATACTGAATACACTCATTTTCAACTCATTTGTGTTCTGTCAGGTTTTCAATGAGATCAGTTCCAGAGATATGGATAAGATTAATGTTTTTGAAGGTATACTGAAGAATTATGTGTTCGTAGCTGTCCTCACTTGCACTGTCATCTTCCAAATCATAATTGTCGAATTTTTGGGCACCTTTGCAAGCACCTCTTCGCTTACCATGAAGCAGTGGTTCGGTAGTGTTTTGTTTGGAGTCCTTGGAATGCCAGTTGCAGCAGCTTTAAAGACAATACCTGTGGGATCTAACTAA 2109 0.4225 MLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLVSRKLREGSQWTWSGDDAMEIVEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKACICGKIKEVKGSNVSSDFSSDIPDSALAILLQSIFNNTGGEVVKNMNEKVEILGSPTETALLEFGLSLGGDFQKERQAVKLVKVEPFNSLKKRMGVVLQLPEGGFRAHCKGASEIILAACEKVVDPNGEVVPLEEDSINYLKDTINKFADEALRTLCLAYVDIGDQFSVETPIPNRGYTCIGIVGIKDPVRPGVRESVAICRSAGVTVRMVTGDNINTAKAIARECGILTDGIAIEGPEFREKSEEELLKIIPKLQVMARSSPMDKHTLVKQLRTTFEEVVSVTGDGTNDAPALHEADIGLAMGISGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRPPVGRKGNFISNVMWRNILGQSIYQFAVLWFLQTRGKAAFHLDGPDSELILNTLIFNSFVFCQVFNEISSRDMDKINVFEGILKNYVFVAVLTCTVIFQIIIVEFLGTFASTSSLTMKQWFGSVLFGVLGMPVAAALKTIPVGSN 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271920g00011 702 PANTHER CATION TRANSPORTING ATPASE 1 699 - -
Stsc271920g00011 702 FunFam Calcium-transporting ATPase 455 701 - -
Stsc271920g00011 702 Gene3D - 344 455 IPR023214 -
Stsc271920g00011 702 FunFam Calcium-transporting ATPase 332 483 - -
Stsc271920g00011 702 SUPERFAMILY HAD-like 135 543 IPR036412 -
Stsc271920g00011 702 ProSitePatterns E1-E2 ATPases phosphorylation site. 139 145 IPR018303 -
Stsc271920g00011 702 Pfam Cation transporting ATPase, C-terminus 523 696 IPR006068 -
Stsc271920g00011 702 FunFam Calcium-transporting ATPase 147 343 - -
Stsc271920g00011 702 Pfam E1-E2 ATPase 2 115 - -
Stsc271920g00011 702 SFLD Haloacid Dehalogenase 119 490 - -
Stsc271920g00011 702 NCBIfam HAD-IC family P-type ATPase 78 159 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271920g00011 702 NCBIfam HAD-IC family P-type ATPase 404 519 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271920g00011 702 Gene3D - 195 343 IPR023299 GO:0000166
Stsc271920g00011 702 NCBIfam calcium-translocating P-type ATPase, PMCA-type 1 699 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc271920g00011 702 PRINTS P-type cation-transporting ATPase superfamily signature 358 368 - -
Stsc271920g00011 702 PRINTS P-type cation-transporting ATPase superfamily signature 137 151 - -
Stsc271920g00011 702 PRINTS P-type cation-transporting ATPase superfamily signature 462 474 - -
Stsc271920g00011 702 PRINTS P-type cation-transporting ATPase superfamily signature 438 457 - -
Stsc271920g00011 702 PRINTS P-type cation-transporting ATPase superfamily signature 336 347 - -
Stsc271920g00011 702 Pfam Cation transport ATPase (P-type) 199 277 - -
Stsc271920g00011 702 PRINTS H+-transporting ATPase (proton pump) signature 295 313 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271920g00011 702 PRINTS H+-transporting ATPase (proton pump) signature 470 495 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271920g00011 702 PRINTS H+-transporting ATPase (proton pump) signature 438 454 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271920g00011 702 SFLD p-type atpase 119 490 IPR044492 -
Stsc271920g00011 702 Gene3D - 1 194 - -
Stsc271920g00011 702 Gene3D - 456 699 - -
Stsc271920g00011 702 SUPERFAMILY Calcium ATPase, transmembrane domain M 22 698 IPR023298 -
Stsc271920g00011 702 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 143 348 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271920g00011 Stsc-Chr271920 63219 67526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271920g00011 1 702 Primary Pumps ATPases AT1G27770 81.081 0.0 1162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271920g00011 K01537 - gmx:100810758 1244.57