Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271920g00010 ATGGAGAGTTACCTGAACGAGAATTTCGGAGAGGTGAAAGCCAAGAACTCATCGGAGGAAGCGCTTCAGAGATGGAGGAAACTTTGCTGGCTTGTTAAGAACCGCAAGAGGAGGTTCCGCTTCACTGCAAACCTCTCTAAGCGATTCGAAGCTGAGGCTATCAGACGCTCCAATCAGGAGAAATTTAGAGTTGCAGTGTTAGTATCGCAAGCTGCTCTTCAGTTTATCCATGGTTTAAGTTTGTCAAGTGAGTATACTGTACCAGAGGAAGTTAAAGCTGCGGGTTTTGACATCTGCGCTGATGAGTTAGGATCAATTGTAGAAGGACGTGATGTGAAGAAGTTGAAAATTCATGGTGGGGTTGAAGGGATTGCTAACAAACTCGATACCTCTGTCGATGATGGCATATCAACATCTGAGCACATTCTGCAAAAGAGGAAAGATATTTATGGACTCAATAAATTCACGGAAAACCCACCCCAGGGATTTTGGGTTTATGTATGGGAAGCCCTTCAAGATACAACTCTTATGATACTTGCTGTCCCTGCTGATGGGCTTTTTGTCTCTGGTTTCTCTCTGTTAATAAATGAATCAAGTTTGACTGGAGAGAGTGAACCTGTGAATGTCAGTAACCTAAATCCTTTTCTTCTCTCTGGTACCAAAGTTCAGGATGGATCGTGCAAGATGCTCGTGACAACTGTTGGAATGAGAACCCAGTGGGGTAAACTAATGGCTACTCTAAGTGAAGGGGGAGATGATGAAACTCCACTGCAGGTTAAACTCAATGGTGTAGCTACTATTATTGGGAAAATAGGCCTTTTCTTTGCCGTTGTGACTTTTTCTGTGTTAGTCCAAGGACTGGTCAGCCGCAAGCTGCGAGAAGGGTCCCAGTGGACGTGGTCTGGTGATGATGCCATGGAAATTGTAGAGTTCTTTGCTATTGCGGTTACTATTGTTGTCGTTGCTGTCCCAGAAGGTTTACCTTTAGCTGTTACATTGAGCCTTGCTTTTGCAATGAAAAAGATGATGAACGATAAGGCACTTGTTCGTAATTTGGCTGCTTGTGAGACAATGGGCTCTGCCACCACTATCTGCAGTGACAAGACTGGCACGCTGACTACTAACCATATGACTGTTGTAAAAGCTTGCATATGTGGGAAGATTAAAGAAGTAAAGGGCTCTAACGTGTCTTCTGATTTCTCATCTGATATTCCTGATTCTGCATTGGCAATTCTACTTCAATCAATATTTAACAACACTGGAGGAGAAGTTGTAAAAAACATGAATGAGAAGGTTGAGATTCTGGGATCACCAACAGAGACTGCTCTCTTGGAATTTGGGCTGTCACTTGGAGGTGATTTCCAAAAGGAGCGACAAGCAGTGAAACTTGTGAAAGTTGAACCGTTTAACTCTTTGAAGAAGCGCATGGGAGTGGTTCTACAGCTTCCTGAAGGTGGCTTCAGAGCACATTGTAAAGGTGCCTCTGAAATAATTCTAGCTGCATGTGAAAAAGTTGTAGACCCAAATGGTGAGGTGGTTCCCCTTGAAGAAGACTCTATTAATTACTTGAAGGATACAATAAACAAATTTGCTGATGAAGCTCTCCGAACCCTTTGCCTTGCATATGTGGATATCGGTGATCAATTCTCAGTTGAAACTCCTATCCCTAATAGAGGTTACACATGTATAGGAATTGTGGGTATTAAAGATCCTGTTCGTCCTGGAGTTCGAGAGTCTGTTGCCATTTGTAGGTCGGCTGGTGTTACTGTTAGGATGGTTACTGGAGACAACATAAACACTGCAAAGGCTATTGCTAGAGAATGTGGAATTTTAACGGATGGAATTGCAATTGAAGGCCCTGAGTTTCGTGAAAAGAGTGAGGAAGAATTGCTTAAAATAATTCCAAAACTTCAGGTGATGGCTCGATCTTCTCCCATGGATAAGCATACCCTGGTGAAACAATTGAGGACAACATTTGAAGAGGTTGTTTCAGTTACTGGTGATGGTACAAATGACGCTCCTGCACTTCATGAAGCAGATATTGGGCTTGCAATGGGCATTTCCGGGACTGAGGTAGCAAAAGAAAGTGCCGATGTCATAATACTGGATGATAATTTCTCAACTATTGTGACTGTGGCCAAATGGGGCCGATCTGTCTACATAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAACATTGTTGCTTTGATTGTCAACTTCTCTTCTGCCTGTTTGACTGGAAATGCTCCTCTCACTGCTGTTCAACTTCTATGGGTCAACATGATTATGGACACTCTTGGAGCACTTGCTCTAGCCACTGAACCTCCTACTGATGATTTGATGAAAAGACCACCTGTCGGTCGGAAAGGAAACTTCATCAGTAATGTGATGTGGAGGAATATCTTGGGGCAGTCTATATATCAATTTGCTGTACTTTGGTTCCTCCAGACAAGAGGAAAAGCAGCTTTTCATCTTGATGGCCCAGATTCGGAATTGATACTGAATACACTCATTTTCAACTCATTTGTGTTCTGTCAGGTTTTCAATGAGATCAGTTCCAGAGATATGGATAAGATTAATGTTTTTGAAGGTATACTGAAGAATTATGTGTTCGTAGCTGTCCTCACTTGCACTGTCATCTTCCAAATCATAATTGTCGAATTTTTGGGCACCTTTGCAAGCACCTCTTCGCTTACCATGAAGCAGTGGTTCGGTAGTGTTTTGTTTGGAGTCCTTGGAATGCCAGTTGCAGCAGCTTTAAAGACAATACCTGTGGGATCTAACTAA 2793 0.4253 MESYLNENFGEVKAKNSSEEALQRWRKLCWLVKNRKRRFRFTANLSKRFEAEAIRRSNQEKFRVAVLVSQAALQFIHGLSLSSEYTVPEEVKAAGFDICADELGSIVEGRDVKKLKIHGGVEGIANKLDTSVDDGISTSEHILQKRKDIYGLNKFTENPPQGFWVYVWEALQDTTLMILAVPADGLFVSGFSLLINESSLTGESEPVNVSNLNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLVSRKLREGSQWTWSGDDAMEIVEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKACICGKIKEVKGSNVSSDFSSDIPDSALAILLQSIFNNTGGEVVKNMNEKVEILGSPTETALLEFGLSLGGDFQKERQAVKLVKVEPFNSLKKRMGVVLQLPEGGFRAHCKGASEIILAACEKVVDPNGEVVPLEEDSINYLKDTINKFADEALRTLCLAYVDIGDQFSVETPIPNRGYTCIGIVGIKDPVRPGVRESVAICRSAGVTVRMVTGDNINTAKAIARECGILTDGIAIEGPEFREKSEEELLKIIPKLQVMARSSPMDKHTLVKQLRTTFEEVVSVTGDGTNDAPALHEADIGLAMGISGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRPPVGRKGNFISNVMWRNILGQSIYQFAVLWFLQTRGKAAFHLDGPDSELILNTLIFNSFVFCQVFNEISSRDMDKINVFEGILKNYVFVAVLTCTVIFQIIIVEFLGTFASTSSLTMKQWFGSVLFGVLGMPVAAALKTIPVGSN 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271920g00010 930 Pfam Cation transporting ATPase, C-terminus 751 924 IPR006068 -
Stsc271920g00010 930 SFLD Haloacid Dehalogenase 347 718 - -
Stsc271920g00010 930 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 926 IPR023298 -
Stsc271920g00010 930 NCBIfam calcium-translocating P-type ATPase, PMCA-type 180 927 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc271920g00010 930 Gene3D - 362 711 IPR023214 -
Stsc271920g00010 930 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Stsc271920g00010 930 Pfam E1-E2 ATPase 181 343 - -
Stsc271920g00010 930 SUPERFAMILY Calcium ATPase, transduction domain A 181 245 IPR008250 -
Stsc271920g00010 930 SFLD p-type atpase 347 718 IPR044492 -
Stsc271920g00010 930 FunFam Calcium-transporting ATPase 375 571 - -
Stsc271920g00010 930 FunFam Calcium-transporting ATPase 17 77 - -
Stsc271920g00010 930 Gene3D - 375 571 IPR023299 GO:0000166
Stsc271920g00010 930 SUPERFAMILY HAD-like 363 771 IPR036412 -
Stsc271920g00010 930 NCBIfam HAD-IC family P-type ATPase 632 747 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271920g00010 930 NCBIfam HAD-IC family P-type ATPase 306 387 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271920g00010 930 Pfam Cation transport ATPase (P-type) 427 505 - -
Stsc271920g00010 930 Pfam Cation transporter/ATPase, N-terminus 119 181 IPR004014 -
Stsc271920g00010 930 Gene3D - 249 923 - -
Stsc271920g00010 930 PRINTS H+-transporting ATPase (proton pump) signature 666 682 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271920g00010 930 PRINTS H+-transporting ATPase (proton pump) signature 523 541 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271920g00010 930 PRINTS H+-transporting ATPase (proton pump) signature 698 723 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271920g00010 930 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 371 576 IPR023299 GO:0000166
Stsc271920g00010 930 ProSitePatterns E1-E2 ATPases phosphorylation site. 367 373 IPR018303 -
Stsc271920g00010 930 PRINTS P-type cation-transporting ATPase superfamily signature 690 702 - -
Stsc271920g00010 930 PRINTS P-type cation-transporting ATPase superfamily signature 365 379 - -
Stsc271920g00010 930 PRINTS P-type cation-transporting ATPase superfamily signature 564 575 - -
Stsc271920g00010 930 PRINTS P-type cation-transporting ATPase superfamily signature 666 685 - -
Stsc271920g00010 930 PRINTS P-type cation-transporting ATPase superfamily signature 586 596 - -
Stsc271920g00010 930 PRINTS P-type cation-transporting ATPase superfamily signature 196 210 - -
Stsc271920g00010 930 FunFam Calcium-transporting ATPase 560 711 - -
Stsc271920g00010 930 FunFam Calcium-transporting ATPase 683 929 - -
Stsc271920g00010 930 Gene3D - 17 77 - -
Stsc271920g00010 930 PANTHER CATION TRANSPORTING ATPASE 84 181 - -
Stsc271920g00010 930 Gene3D - 181 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271920g00010 Stsc-Chr271920 63219 69263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271920g00010 181 930 Primary Pumps ATPases AT1G27770 81.358 0.0 1246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271920g00010 K01537 - gmx:100810758 1332.78