Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271920g00009 ATGGACGATCTTTCTTCGTGCAACCTTCTGTGTGAAGAGAATGAAACATTTTTGGGATTGGAAGGAGATGAAGAATGCTCTGCTGCCCTTCTTCAATCAGGAATAATGGATCATCAAGGTGTTTCAGAGGATGAGGATTTGGGGGTTCTGCTTGAGAGAGAGATCCGTATTGGGTTCAAAAAAGATGAGACTTTTGTGTTTGAAGATTCGATGAAACGTTCCAGAATGGATGCAATCAATTGGATTCTCAAAACAAGAGCAACATTGGGATTTCGCTTTCAAACGGCTTATTTGTCTCTCACATATTTCGATCGGTTCCTTTCCAAGAGGTCCATTGATAGTGAAAAGGAGTGGGCAATCCGGTTATTATCAATTGCATGCCTTTCTTTGGCTGCAAAAATGGAAGAATGCAATGTGCCTGAGTTAACAGTGTTTCAGTCAAAAGATTACTGCTTTGAGAGCAAAGTGATTAGGAGAATGGAGATTTTGGTGCTTACCACATTGGATTGGAATATGAGCATTGTTACCCCCTTTGATTTCCTTCCATTTTTCATTTCAAAGTTCTGCATCAATCAACCCCCATCACCAACTACCACTTTTTCCAACACCATGCACCTCATCTTCACCACAATCAAAGAGGTGAACATAATGGATCACAAACCATCTGTTGTTGCAGCTGCTGCTACTTTGGTGTCATTGGATCAGCAACTAACCATAGAAGCTCTAGAGTTGAAGATTAGTTCAATTCCTCAACATAGGTTTCTTGATCCTAAAGATGTATTTTCATGCTACAATCTAATTCAAAGATTACAGGCAGAGAATAATACAAGAAGAGACAGTAATGTTTTGCATACTCCTAGTCCTTCAACAATTGACATGATAGAGAGCTCTCTAGTTACTTCTTCTGCTGCTGTGACAAAGAGGAGAAGACTCTCATTTAATGATGATCAAAGTCCTCAAGGGAAGGGACTTGACTAG 978 0.3988 MDDLSSCNLLCEENETFLGLEGDEECSAALLQSGIMDHQGVSEDEDLGVLLEREIRIGFKKDETFVFEDSMKRSRMDAINWILKTRATLGFRFQTAYLSLTYFDRFLSKRSIDSEKEWAIRLLSIACLSLAAKMEECNVPELTVFQSKDYCFESKVIRRMEILVLTTLDWNMSIVTPFDFLPFFISKFCINQPPSPTTTFSNTMHLIFTTIKEVNIMDHKPSVVAAAATLVSLDQQLTIEALELKISSIPQHRFLDPKDVFSCYNLIQRLQAENNTRRDSNVLHTPSPSTIDMIESSLVTSSAAVTKRRRLSFNDDQSPQGKGLD 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271920g00009 325 FunFam Cyclin-D5-1 70 173 - -
Stsc271920g00009 325 ProSitePatterns Cyclins signature. 75 106 IPR006671 -
Stsc271920g00009 325 PANTHER CYCLINS 50 271 IPR039361 -
Stsc271920g00009 325 SUPERFAMILY Cyclin-like 45 172 IPR036915 -
Stsc271920g00009 325 Gene3D - 68 173 - -
Stsc271920g00009 325 SMART cyclin_7 80 166 IPR013763 -
Stsc271920g00009 325 Pfam Cyclin, N-terminal domain 71 173 IPR006671 -
Stsc271920g00009 325 Pfam Cyclin, C-terminal domain 175 290 IPR004367 -
Stsc271920g00009 325 SUPERFAMILY Cyclin-like 158 271 IPR036915 -
Stsc271920g00009 325 CDD CYCLIN_AtCycD-like_rpt2 175 267 - -
Stsc271920g00009 325 CDD CYCLIN_AtCycD-like_rpt1 75 170 - -
Stsc271920g00009 325 Gene3D - 174 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271920g00009 Stsc-Chr271920 59231 60595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271920g00009 74 275 Core Cell Cycle Gene Families AT1G70210 39.336 3.90e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271920g00009 K18811 - gmx:100798728 395.586