Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271920g00006 ATGGAAAAAGATTCTAATGGGCATTGGTTCTGCGGTGATGCTTGTGAGGGGATATTTTCCAAACTGCATGACATGTTGGGAAACCCAATTATTGTGGGTCATGGTAATCTAACTTGGACATTGTTGAAGAGCAACAATGATGATAATGGAGGAATTAGTGAGATGGAGAGCAAGCTGAATGTGGCACTTGGAGTAATGCATGAGTGTTTTGAGCCCATTGTGGATACTCTCCATGGAAAAGACATTGCTGCTGATGTTATGTTCAGCAGAGAGTATTGGCTGCAACGTTTGAACTTTAAAGGGTTCTACACTGTGATTCTTGAGAGGAATGATGAGGTGATCTCTGTTGCAAACACAAGGATTTATGGCCAAAAGGTTGCAGAAGTGCCACTCATTGCGACGAGGGAGCGGTTCCGAAAGCGGGGAATGTGTCAAGTTCTGATGAAACAGCTTGAGAAGCTGTTGGTTGAGTTGGGAGTTGAGAGGTTGGTTTTGCCTGCTTCTCCTCATGTAATAGAAACTTGGACAAACTCATTTGGATTTGCAAAAATGACAGAGTCAGAACAGTATGAGTGTTTACGGTATGCTCTTGTAAATTTTCCTGACACAACATTGTGTCACAAATCATTGAAGCAACCTTTGATGCTGCTTGAGGCCTAA 660 0.4258 MEKDSNGHWFCGDACEGIFSKLHDMLGNPIIVGHGNLTWTLLKSNNDDNGGISEMESKLNVALGVMHECFEPIVDTLHGKDIAADVMFSREYWLQRLNFKGFYTVILERNDEVISVANTRIYGQKVAEVPLIATRERFRKRGMCQVLMKQLEKLLVELGVERLVLPASPHVIETWTNSFGFAKMTESEQYECLRYALVNFPDTTLCHKSLKQPLMLLEA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271920g00006 219 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 65 198 IPR000182 GO:0016747
Stsc271920g00006 219 Gene3D - 59 194 - -
Stsc271920g00006 219 PANTHER PHD FINGER PROTEIN 12 4 212 IPR042163 GO:0003714|GO:0045892
Stsc271920g00006 219 Pfam Acetyltransferase (GNAT) family 95 181 IPR000182 GO:0016747
Stsc271920g00006 219 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 86 198 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271920g00006 Stsc-Chr271920 32200 32925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271920g00006 5 212 PHD Transcription Factor Family AT5G63900 40.476 1.31e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Stsc271920g00006 Acetyltransf_1 1.9e-06 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271920g00006 - - aip:107608518 327.02