Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc271920g00001 | ATGGAGGACGCATTTGCCAGATCTATTCCCGAGGTCCTTGATCACTTTGGAGTCGACCCAACTAAAGGTCTATCAGATACCCAGGTGATTCAACATGGTAGATTGTATGGTATAAACGTGCTGCCTGAAGATAAAAGAGCTCCTTTCTGGAAATTGGTTTTGAAGCAATTTGATGATTTGCTTGTGAAGATACTTATTGCAGCTGCAGTGATATCATTTCTTCTGGCTTTATTTAATGGAGAAACAGGCTTAATGGCATTTCTGGAGCCTTCTGTTATTCTATTGATATTAGCTGCAAATGCAGCTGTGGGGGTGATTACAGAAACAAATGCTGAAAAAGCTCTTGAGGAGCTACGTGCGTATCAAGCAGATGTGGCGACTGTTTTGCGAAATGGTTGTTTTTCTATACTCCCTGCCACTGAACTTGTTCCTGGTGATATTGTGGAAGTTTCTGTGGGGTGCAAAATTCCTGCCGATATGAGGATGATTGAGATGCTAAGTAGTCAAGTTCGTGTTGATCAAGCTATTCTTACTGGTGAGAGCAGCTCGGTGGAGAAAGAGCTTCAAACAACCACAACAACAAATGCTGTATACCAAGATAAAACAAATATTTTGTTCTCAGGAACAGTTATGGTTGCTGGTAGGGCAAGAGCTGTTGTGGTGGGAGTTGGTTCCAACACTGCCATGGGCAACATTCGTGATTCAATGTTGCACACAGAGGATGAGGCAACACCATTGAAAAAGAAGCTGGATGAGTTTGGTACCTTTTTAGCCAAGGTTATTGCAGGGATTTGTGTATTGGTGTGGATTGTAAATATTGGTCATTTTCGTGACCCTGCTCATGGTGGTTTCTTGCGTGGTGCTATTCATTATTTTAAGATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCTGAAGGGCTCCCAGCTGTTGTTACGACG | 939 | 0.4281 | MEDAFARSIPEVLDHFGVDPTKGLSDTQVIQHGRLYGINVLPEDKRAPFWKLVLKQFDDLLVKILIAAAVISFLLALFNGETGLMAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADVATVLRNGCFSILPATELVPGDIVEVSVGCKIPADMRMIEMLSSQVRVDQAILTGESSSVEKELQTTTTTNAVYQDKTNILFSGTVMVAGRARAVVVGVGSNTAMGNIRDSMLHTEDEATPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPAHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTT | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc271920g00001 | 313 | Pfam | Cation transporter/ATPase, N-terminus | 8 | 72 | IPR004014 | - | |
| Stsc271920g00001 | 313 | Coils | Coil | 111 | 131 | - | - | |
| Stsc271920g00001 | 313 | NCBIfam | HAD-IC family P-type ATPase | 92 | 312 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc271920g00001 | 313 | Gene3D | - | 55 | 313 | - | - | |
| Stsc271920g00001 | 313 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 2 | 313 | IPR023298 | - | |
| Stsc271920g00001 | 313 | FunFam | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 209 | 313 | - | - | |
| Stsc271920g00001 | 313 | Pfam | E1-E2 ATPase | 122 | 313 | - | - | |
| Stsc271920g00001 | 313 | FunFam | Calcium-transporting ATPase | 112 | 237 | - | - | |
| Stsc271920g00001 | 313 | Gene3D | - | 22 | 237 | - | - | |
| Stsc271920g00001 | 313 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 8 | 313 | - | - | |
| Stsc271920g00001 | 313 | SMART | Cation_ATPase_N_a_2 | 3 | 77 | IPR004014 | - | |
| Stsc271920g00001 | 313 | SUPERFAMILY | Calcium ATPase, transduction domain A | 124 | 235 | IPR008250 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc271920g00001 | Stsc-Chr271920 | 943 | 6276 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc271920g00001 | 1 | 313 | Primary Pumps ATPases(2) | AT1G10130 | 84.984 | 0.0 | 532 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc271920g00001 | K05853 | - | gmx:100783509 | 553.903 |