Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271919g00019 ATGCGTAGACAACTAAGCGAAGAGCTAGGGCTTGAACTCAAACAAATCAAATTTTGGTTTCAAAATAGAAGGACCCAAGCAAAGGCTCAAGCTGATAGAACACTTAACTGTTCTCTTCGGAGAGAGAATGAAAAAATCATAGCAGAAAACTTGATGTTTAGAGAGACATTGAAGAATTTAGTTTGCGTAAATTATGGTCGTCCAGCCCTTCCTGATGATGCTGCCCAACATCGCATGGAACAACTAATCCTCCAAAACAAATTTCTCAAAGAACAGCATAAGAAAATGGCAGAGTTTCTTGCAAGCTACAATGTGATAGGTCCAAGTAGAGTGTCATCATCCCATTGTTATTCCCATAATCAGGAATTATCATCAATGCTATCTTCTGGAAGCAGTAGCATTACTACTATAAATAATCCTTCTCCAACCACCACAAGAATTGCAATACCAACTTCTTTCCTTGATCCTCACATTCAATCTTCTCTCTGCCAAAACACTACTACGAGAACCCTAATTGGTATTCGCTTCTTCATGGAGGAGGAGATAATAAGAATGAGAGAGGCTGCATCTAAGGCCATGGACGAATTATCCAGGCTTCTTCGCATGAACGAGCCTTTCTGGTATAGGTCAACTGTTAACAGCAGCTTCATTCTTCATCGTCAGACCTACGACAGCGTCTTCCACAGAGTAGGCTTGAGGTGTGGAGCACGCAGAGAGGCATCAAAAGATTCACGACTGGTGGCCATGAATGGATTCAAATTGGTTGACATGTTCTTAGATTCGGAAAAATGGGTTTCTCTGTTCCCAACAATTGTTAAAAGAGCAAAGACCATGGAAGTACTCAACACCGGTTTGCCACAGACACGAAGTGGAGCCTTGCAATTGATGTATGGAGAGATACACACTCTTTCGCCGATGATTAGGCCTCGGGAATTCTTCTTCCTGCGCTATTGTGTGCAAGTTGATGTAGGTGTATGGATCATATCAGATGTCTCATTTGATTCCTCCAGATTCACTAATTCTCTCACTTGGAAGCTTCCTTCTGGATGCTTAATCCAAGACATGAACAATGGCTACTCCACCGTTACTTGGTTGGAACATGTGGAAATAAGTGATGATATTCAAACCCATCCGATTTTCAGAGACGTAGTTTCTGGGAATTATTATGCATTTGGAGCAGAAAGATGGATATTAACACTAGAAAGAATGTGCGAGAGAATTGTATTCGCCTCCATGGACATGATGCCTAGTTGTGATATTGGAATTATTGCTTTACCTGAAGGAAGGAAAAATGTGATGAAACTTTCTCAGCGGATGGTGAAGGTATTTTGTAGGTATCTGGACATGTCAGGTAACATGGAGTTGCAGTGTGGGGAGTACCACCGTAATGGTGTAAGGTTAGGTATTCGAACAAGTTTAGAGCCTGGTGTGCCTAAGGGCATGATTGTCACTGCATCTACCTCCATTTGGCTTCCTATCTTGCCTCAATCACTCTTTAACTTCCTCAAAGATCCAACAACTAGACCCATGTGGGATGCTCTATGCTATGCAAATCCAGTGGTTCAGATTCAGCGCATCTCAAATGGAACTTTCACAGATAACTTCACAACAATCATTCGGCGTCATGACACGTTGGTTCTCCAAGAATGCTGCACGGATTCCTTGGGAAGCATGGTGGTGTATGCTCCGGTGAGTGTTGACACAGTAACTGCCACAATCAATGGAGAAGGCACAACGGAGATTCCTATTCTCCCCTCGGGCTTCACCATATGCGGAGATGGATCTCCTCCGCGAGGACCACCACCTTATTATGGCTGTGCCCCACCACCGGAAGCTAGGCATTACGGTGGGTCCGTACTAACCATGGCAATACAGGTGCTTGTTTGTAACCAACATGAGATGGGTCATCCCCTCAACATGAACATCGTTGATGCTGCCTATGGACTCGCTTCCACAACTCTACACAACATTAAAGCCGCCGTGATTTCTTCCTCATGA 1998 0.4364 MRRQLSEELGLELKQIKFWFQNRRTQAKAQADRTLNCSLRRENEKIIAENLMFRETLKNLVCVNYGRPALPDDAAQHRMEQLILQNKFLKEQHKKMAEFLASYNVIGPSRVSSSHCYSHNQELSSMLSSGSSSITTINNPSPTTTRIAIPTSFLDPHIQSSLCQNTTTRTLIGIRFFMEEEIIRMREAASKAMDELSRLLRMNEPFWYRSTVNSSFILHRQTYDSVFHRVGLRCGARREASKDSRLVAMNGFKLVDMFLDSEKWVSLFPTIVKRAKTMEVLNTGLPQTRSGALQLMYGEIHTLSPMIRPREFFFLRYCVQVDVGVWIISDVSFDSSRFTNSLTWKLPSGCLIQDMNNGYSTVTWLEHVEISDDIQTHPIFRDVVSGNYYAFGAERWILTLERMCERIVFASMDMMPSCDIGIIALPEGRKNVMKLSQRMVKVFCRYLDMSGNMELQCGEYHRNGVRLGIRTSLEPGVPKGMIVTASTSIWLPILPQSLFNFLKDPTTRPMWDALCYANPVVQIQRISNGTFTDNFTTIIRRHDTLVLQECCTDSLGSMVVYAPVSVDTVTATINGEGTTEIPILPSGFTICGDGSPPRGPPPYYGCAPPPEARHYGGSVLTMAIQVLVCNQHEMGHPLNMNIVDAAYGLASTTLHNIKAAVISSS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271919g00019 665 ProSitePatterns 'Homeobox' domain signature. 5 28 IPR017970 GO:0000981|GO:0006355
Stsc271919g00019 665 ProSiteProfiles 'Homeobox' domain profile. 1 30 IPR001356 GO:0003677
Stsc271919g00019 665 Gene3D - 1 39 - -
Stsc271919g00019 665 SUPERFAMILY Bet v1-like 179 406 - -
Stsc271919g00019 665 CDD homeodomain 1 30 IPR001356 GO:0003677
Stsc271919g00019 665 SMART START_1 187 406 IPR002913 GO:0008289
Stsc271919g00019 665 Gene3D - 188 391 IPR023393 -
Stsc271919g00019 665 Pfam START domain 189 406 IPR002913 GO:0008289
Stsc271919g00019 665 CDD START_ArGLABRA2_like 184 405 - -
Stsc271919g00019 665 ProSiteProfiles START domain profile. 178 409 IPR002913 GO:0008289
Stsc271919g00019 665 Pfam Homeodomain 2 28 IPR001356 GO:0003677
Stsc271919g00019 665 SUPERFAMILY Bet v1-like 426 598 - -
Stsc271919g00019 665 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 661 IPR042160 -
Stsc271919g00019 665 SUPERFAMILY Homeodomain-like 2 31 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271919g00019 Stsc-Chr271919 85183 88901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271919g00019 2 661 Homeobox Transcription Factor Family AT1G73360 38.261 3.26e-141 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc271919g00019 START 5.5e-27 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271919g00019 K09338 - vvi:100254711 534.258