Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271919g00018 ATGGATTCCCATTTGGTTCAGCATGAAATTGATGTCCTTCCCTATCAGCAACCCACTTGGGATCCCAATGTTCAGGAAATGCAAGATATGGGTTATTCTAATCACTCAGAACACCAACCACATGATCAGCAATTTCAGCAAACTGAGGCACAGAACTGCAGCCAAAGTTACAATTCCTCCTCCATTTTGGACCCGCCTTACCCTTCACAAGATCTCCTAAACCTTCTCCACTTGCCGAGATGCTCAACTTCGTCTTTGCTTGCCAACCCTGCTATCTGCATCGCGAACAAGATGCAGAGTTTTCAGAATCCAATGGGATTTCTCGGGGATCTTCCAATAGGATCAGACAACACAAGTGCATCCTCAGTACTGTATGATCCTCTACTCCATTTGAACCTGCCTCCGCAGCCTCCGGCCCTCAGAGAGCTGTTTCAGTCTCTTCCCCGTGGATACAGCTTGCCAACAAACTCAAGAAGCGGTTCTCTTTTCGGCGGAGGTGATGAGATTGAAGATGGAAGCCAACTTGACATGGGAGTGCTCGACTTCAACAGGGTCACAGCTTCTGTGGGCAAAGGAAGGGAAGGGAAAGGTACCAAACACTTTGCAACTGAGAAACAAAGAAGAGAGCAACTGAATGGCAAATACAAAATCCTGAGGAGTCTTATCCCAAGCCCCACCAAGATGGATAGAGCCTCTGTGGTAGGTGATGCCATTGAATATATAAGGGAGCTGCTCAGAACGGTCAATGAGCTCAAATTACTGGTGGAGAAGAAAAGATATGGAAGGGAGAGGTGCAAAAGGAAGAAAACTGAAGATGATGCTGCAGAGAGCTGCAACATAAAGCCTTTTAGTGATCCAGATGGATGCATAAGGACCTCATGGCTTCAAAGGAAATCGAAAGACAGCGAGGTTGATGTGCGGATTGTTGATGATGATGTTACAATCAAACTATTCCAGAGGAAGAAGATTAACTGTCTGCTTTCAGTCGCCAAGGTTCTGGATGAACTTCAGTTAGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTATTCAATAGCAAGATAATAGAAGGTTCTTCAGTCTATGCCAGTGCTATAGCCAACAGGGTGATCGATGTTATGGACACTCAATATGCAGCAGCAGTTCCACATACAAGTAGCTATTAG 1182 0.4535 MDSHLVQHEIDVLPYQQPTWDPNVQEMQDMGYSNHSEHQPHDQQFQQTEAQNCSQSYNSSSILDPPYPSQDLLNLLHLPRCSTSSLLANPAICIANKMQSFQNPMGFLGDLPIGSDNTSASSVLYDPLLHLNLPPQPPALRELFQSLPRGYSLPTNSRSGSLFGGGDEIEDGSQLDMGVLDFNRVTASVGKGREGKGTKHFATEKQRREQLNGKYKILRSLIPSPTKMDRASVVGDAIEYIRELLRTVNELKLLVEKKRYGRERCKRKKTEDDAAESCNIKPFSDPDGCIRTSWLQRKSKDSEVDVRIVDDDVTIKLFQRKKINCLLSVAKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVMDTQYAAAVPHTSSY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271919g00018 393 CDD bHLH_AtMYC1_like 200 271 IPR045896 -
Stsc271919g00018 393 SMART finulus 201 250 IPR011598 GO:0046983
Stsc271919g00018 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 257 IPR036638 GO:0046983
Stsc271919g00018 393 Pfam Helix-loop-helix DNA-binding domain 198 244 IPR011598 GO:0046983
Stsc271919g00018 393 Gene3D - 192 273 IPR036638 GO:0046983
Stsc271919g00018 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Stsc271919g00018 393 MobiDBLite consensus disorder prediction 23 61 - -
Stsc271919g00018 393 PANTHER TRANSCRIPTION FACTOR BHLH91 17 386 IPR045895 GO:0006355|GO:0048658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271919g00018 Stsc-Chr271919 77622 78980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271919g00018 28 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 41.337 7.96e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271919g00018 HLH 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271919g00018 - - gmx:100782512 655.21