Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271919g00002 ATGCTGGCTTCGTTCCCTTTATCCCCAAAACCCTTTGCAAGCGTTAGAGCTGAATTGGACACACAGCAATCTTCTTTTCTCAAGTTGGCACCGAATCCATATCCTCTTGCAAGCAAAATCCTTGTTAAGAATTTGCCATACACTACTGGTGAGACTACTTTGCAAAAGGAATTTTCGAATTTCGGCAAGATAGCTGAAGTTAAGGTTGCTAAAGATGTAAAAACAAAAAGATCTAAAGGATATGCTTTTATTCAATACACCAATCAAGATGACGCTATGCTTGCGATAGAAACGATGGATCAGAAGGATTTTTATGGTAGGACGATTCATTTAGAAATCGCAAAGCCTGGCTGGGATGATTATTGTTCACGGCCAAGGACCTCAGGGCCCCCTAAGAAATGGACTTTGCCAGAGCCAGAGCAAGAGGAAGTGGTAGATTGCTGGTACTGA 450 0.42 MLASFPLSPKPFASVRAELDTQQSSFLKLAPNPYPLASKILVKNLPYTTGETTLQKEFSNFGKIAEVKVAKDVKTKRSKGYAFIQYTNQDDAMLAIETMDQKDFYGRTIHLEIAKPGWDDYCSRPRTSGPPKKWTLPEPEQEEVVDCWY 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271919g00002 149 SUPERFAMILY RNA-binding domain, RBD 37 129 IPR035979 GO:0003676
Stsc271919g00002 149 SMART rrm1_1 39 112 IPR000504 GO:0003723
Stsc271919g00002 149 CDD RRM_SF 40 112 - -
Stsc271919g00002 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Stsc271919g00002 149 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 37 125 - -
Stsc271919g00002 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Stsc271919g00002 149 Gene3D - 17 134 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271919g00002 Stsc-Chr271919 19333 21082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271919g00002 38 111 Eukaryotic Initiation Factors Gene Family AT4G34110 29.730 9.12e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271919g00002 - - gmx:100305971 203.756