Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271917g00008 ATGAGGCTGAAGTGTGATCTCCTTCAGTGCTGCTTCGCTAGCACTACTTCAGATACACTTTCAAAGGATGATATATTTCCAGATGATGTTATTCAGCCAAGGGGGATAAGCTTCTCCTACTGGATACTTTCACAAGCAACAAATAATTTTAATAAACTTAATTGTCTTGGAAACATTGGCTTAAAGAATCTATACTATGGAAAACTTAGAGATGGGTGTGAGATTGCAGTTGAAAGACTATCCAATGACAAGAGGCAAATATTTCAGCAGTTCCTCAATGAAATTCTGGTATCAAATATCCTCCCTCACAAAAATCTTGTGACATTTTGCAGTTATGCCTTTCATCATGAGGAATTCCTGGTAGCACATGAATATCTCCCCAATGGAACTCTTGCTGCTTATCTTGAATGTGAGCATAATAAATGCACATTGTCTTTGCTTACTCGAATGGAAATCGCCATCGATATTGCAAATGCATTGACCTATATTCACAAGCATGGCATCATCCACCATAACATACACTCCAGCAATGTTCTGCTGCATAAGAATCTTTCTGCTAAAGTTGCTGGCCTGCACTTATCAAGGAAACTTCCAGCTTCTGTCCATGCAACCACCATTGTTTCGATTTCAAGTGATTTAGCAAGAACCTGTGTTTACATTGACCCAGAGTATGTGTCTCATGGCAGAGTCAGTGCCAAGAATGATGTTTATAGCTTCGGAGTAGTTTTGTGCGATTTGATATCATCCAAGCTTGCTAAGAATTGGGAAGGTTGTGACCAAGAAAGTATTGCTGTCCTTTTGGGCATACATATTGAAAATCAAGCTTTGGACAAGGTACTGGATCCAAGAACCGGCTTCCAATCAGACCATAAGATCATGCAGATGATGACTGAAATAGCAAATCTTGCACTTAAGTGCATGAAATTTCCACAAGAACTAAGGCCAAATATGGAACAGGTGCTAGATATCCTCAATTGCAAAAGACAAGAGAGATATAAAGCTATAGAAGCTTTCAGAATCTTCGACTATGCTGATCTCAGAAACGCCACTAAGCAATTTCTTCGAGATAGGATCCTCGGAGAGGGAGGGTTCGGCTGTGTTTTTTATGGAAAACTTGAAGATGGACGTGAAGTTGCAATAAAACATTTCCACAACATGAGAGAAAATTCTCTTAAGCAATTCATGAATGAAATAGAGATCTTAAGATTCTTGCACCATAAAAACCTGGTTTCACTCTATGGCCGCAGCTCTGGTGACCGTAACGAGCTCCTTCTAGTCTACGAGTATGTCCCCAGTGGCACTGTCTCTACACATCTTCATGGAGGTAAAATCGAAAAGCTACCATGGCTTACTAGATTGAATATTGCCATAGAAACTGCAACTGCATTGGCATATCTTCATGATTCAGGTATCATACACCGTGATGTAAAAGGAAGTAATATCCTCTTGGATGAAACATTTTCTGTTAAAGTTGCAGATTTCGGACTCTCACGGTCCCAACCAGATTATGTTACTCATGTCTCAACAGCTCCAGTTGGGACCAATGCCTATATGGACCCGGAATATATCCAAACAGGCAGGGTTTCCTTTAAAAGTGATGTGTATAGCTTCGGAGTGGTCTTGTTTGAGCTCATATCATCTAGACCTGCATTTTGGAGGGAAGTCCCACGGGGCGAGGCGGTCGGCCTTGCTAAGTTTGCAATCATCAAAGTATTAAGTAACAGATTGAAGGAGCTAGTGGATCCAGATATTGGGTATGATTCAGATAAAAGTGTAACGGAAATGGTAACAGCAGTGGCAGAGTTGGCCTTTCAGTGCGTTCAGTGTCCTAAAGAGCTTAGACCTTCCATGAAACATGTGCTGGAGACCCTTGAGGGTATAAAGAAGGGAAGTTGGGGATTCAACCAGATAACATAG 1917 0.4095 MRLKCDLLQCCFASTTSDTLSKDDIFPDDVIQPRGISFSYWILSQATNNFNKLNCLGNIGLKNLYYGKLRDGCEIAVERLSNDKRQIFQQFLNEILVSNILPHKNLVTFCSYAFHHEEFLVAHEYLPNGTLAAYLECEHNKCTLSLLTRMEIAIDIANALTYIHKHGIIHHNIHSSNVLLHKNLSAKVAGLHLSRKLPASVHATTIVSISSDLARTCVYIDPEYVSHGRVSAKNDVYSFGVVLCDLISSKLAKNWEGCDQESIAVLLGIHIENQALDKVLDPRTGFQSDHKIMQMMTEIANLALKCMKFPQELRPNMEQVLDILNCKRQERYKAIEAFRIFDYADLRNATKQFLRDRILGEGGFGCVFYGKLEDGREVAIKHFHNMRENSLKQFMNEIEILRFLHHKNLVSLYGRSSGDRNELLLVYEYVPSGTVSTHLHGGKIEKLPWLTRLNIAIETATALAYLHDSGIIHRDVKGSNILLDETFSVKVADFGLSRSQPDYVTHVSTAPVGTNAYMDPEYIQTGRVSFKSDVYSFGVVLFELISSRPAFWREVPRGEAVGLAKFAIIKVLSNRLKELVDPDIGYDSDKSVTEMVTAVAELAFQCVQCPKELRPSMKHVLETLEGIKKGSWGFNQIT 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271917g00008 638 Gene3D Transferase(Phosphotransferase) domain 1 430 633 - -
Stsc271917g00008 638 Gene3D Transferase(Phosphotransferase) domain 1 126 338 - -
Stsc271917g00008 638 ProSiteProfiles Protein kinase domain profile. 353 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271917g00008 638 SUPERFAMILY Protein kinase-like (PK-like) 33 328 IPR011009 -
Stsc271917g00008 638 SMART serkin_6 353 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271917g00008 638 SMART serkin_6 50 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271917g00008 638 SUPERFAMILY Protein kinase-like (PK-like) 333 628 IPR011009 -
Stsc271917g00008 638 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Stsc271917g00008 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 338 630 IPR044652 GO:0004672
Stsc271917g00008 638 Gene3D Phosphorylase Kinase; domain 1 339 429 - -
Stsc271917g00008 638 Pfam Protein tyrosine and serine/threonine kinase 70 323 IPR001245 GO:0004672|GO:0006468
Stsc271917g00008 638 Gene3D Phosphorylase Kinase; domain 1 30 125 - -
Stsc271917g00008 638 FunFam Lectin-domain containing receptor kinase A4.3 430 631 - -
Stsc271917g00008 638 ProSiteProfiles Protein kinase domain profile. 50 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271917g00008 638 Pfam Protein kinase domain 356 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271917g00008 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271917g00008 Stsc-Chr271917 41856 44555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271917g00008 340 628 Receptor kinase-like Gene Family AT1G25390 56.314 5.41e-100 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc271917g00008 Pkinase 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271917g00008 - - gsj:114418636 699.893