LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271917g00007	ATGTGTAGTGATATCTTTCAAAGATGCTTCCATGGAACTTCTTCTGGCACATCTCCAGATGATTCAAATCAGATAAAGTGGCCAATCTTATCCTACAAGGAACTTGCAAAAGTTACAAATAATTTTGACCAATGTAACAAGCTTGGAAAGATAGGCTTGGACAAAGTTTACCATGGCAAAAGAAATGGGCGTGAGGTTGCAATTCAAAGATATTCCAACAATAAGATGCACATATTCCAGGAGTTTCTCTATGAAGATTTGATCTCAAGTATCTTACCACATAAGAATCTTGTGTCATTTTATGGATGTGCCTTTCATCATAAGGAGTTCCTGCTAGCACATGAATACCTCTCAAATGGCACTCTTTCTGCTCATCTTCAACGCGAAATGTCACACAGCAGCACACTACATTGGCTCACTAGATTAGACATTGCAATTGACACTGCAAATGCATTGAGCTATCTTCATTACCACGGCATCGTCCATCGCAATATAAAATCCGGCAATATTCTGCTAGACAAGAACCTTTGTGCTAAACTTGGTGGCTTACATTTGTCAAGGAAACTTCCAGAAGGAGTTTCGATCGATGATACCTATGTTACAGATGATCTAGTAGGGACACCTTTATACATAGACCCAGAATATGTCTCAAATGGCAGGTTTGGTGCCAAAATTGATGTTTACAGCTTTGGAGTGGTGTTGTGTGAGCTCATATCATCAAAAGTAGCTAAGCATTGGGAAGGTTACGACGGAGAGAGTATCGCTACAATTTTAAGCAAAAAAATTGGAAGCCAAGATTTGAACAAGGTGTTGGATCCAAGGCTTGGCTTCCAATCAGACCATAAAATCAAGCAGATGATAACTGATGTAGCAGAGCTTGCACTTGATTGCATGAAATCTCCACAAGAACTTAGGCCAAACATGGAGCAAGTGCTAGAGATCCTCAATGGCATAAGAGAAGAGAGATATGAAGCAAACTCAAGAAAAGCTTTTAAAATCTTCCACCATGCCGAACTTGAAGAAGCGACTAAAAATTTTAAGACTCGCCTTGGAAAAGGTGGGTTTGCCACTGTCTACTATGGAAAACTAAAAGATGGGCGCGAAGTTGGAGTAAAACGTTTCCACAATGAGACAGATAAGTCTATCAAGCAATTCATGAAAGAAATCGAGATCTTAAGTCTCTTGCAGCATAAAAATCTGGTGTTACTTTATGGCTGCAGCTCTCGTCACAGCAAGAACCATATTCTAGTGTATGAATACATCTCCAATGGCACACTTTCTAAACATCTTCATGGACCTTCCAGTGAAAAGTTATCATGGCTTTCCAGATTGAACATTGCCATTGAAACTGCAACTGCATTAGTATATCTTCATGATTCAGGCATCATCCACCGTGATGTTAAAGGAAGCAACATTCTCTTGGATGAAAACATGACTGTTAAGGTTGCAGATTTTGGACTCTCAAGGTCACTTCCAAATTCAGTTACACATGTTTCAACCATACCAGTGGGAACTCACGCTTACATAGATCCAGATTACTTTGAATCTGGTAGAGTCAGTGATAGAAGCGATGTCTATAGCTTTGGCGTGGTCTTGTTTGAGCTTATATCATCAAAGCCACCTAGCTTGTTGAATGATGGAGAGAGTGTTACTCTAGCCAAGTTCGGAATTGCCAAGATGTTAAACAATGCATTGGAGGAGCTAGTGGATCCAATTTTCAAGTTTGATTCAGACAAAAATTTGATGGAAATGATAGCAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCTAAAGATCTTAGACCTTCAATGAAACAGGTCCTGGAGACCCTAGAAGGAATAAAGAATGGGACATGGGGATTCAACCAAATAACATAG	1884	0.3986	MCSDIFQRCFHGTSSGTSPDDSNQIKWPILSYKELAKVTNNFDQCNKLGKIGLDKVYHGKRNGREVAIQRYSNNKMHIFQEFLYEDLISSILPHKNLVSFYGCAFHHKEFLLAHEYLSNGTLSAHLQREMSHSSTLHWLTRLDIAIDTANALSYLHYHGIVHRNIKSGNILLDKNLCAKLGGLHLSRKLPEGVSIDDTYVTDDLVGTPLYIDPEYVSNGRFGAKIDVYSFGVVLCELISSKVAKHWEGYDGESIATILSKKIGSQDLNKVLDPRLGFQSDHKIKQMITDVAELALDCMKSPQELRPNMEQVLEILNGIREERYEANSRKAFKIFHHAELEEATKNFKTRLGKGGFATVYYGKLKDGREVGVKRFHNETDKSIKQFMKEIEILSLLQHKNLVLLYGCSSRHSKNHILVYEYISNGTLSKHLHGPSSEKLSWLSRLNIAIETATALVYLHDSGIIHRDVKGSNILLDENMTVKVADFGLSRSLPNSVTHVSTIPVGTHAYIDPDYFESGRVSDRSDVYSFGVVLFELISSKPPSLLNDGESVTLAKFGIAKMLNNALEELVDPIFKFDSDKNLMEMIAAVAELAFQCVQCPKDLRPSMKQVLETLEGIKNGTWGFNQIT	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271917g00007	627	ProSiteProfiles	Protein kinase domain profile.	344	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc271917g00007	627	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	331	620	IPR044652	GO:0004672
	Stsc271917g00007	627	ProSiteProfiles	Protein kinase domain profile.	42	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc271917g00007	627	FunFam	Wall-associated receptor kinase 3	421	626	-	-
	Stsc271917g00007	627	Gene3D	Phosphorylase Kinase; domain 1	16	116	-	-
	Stsc271917g00007	627	SMART	serkin_6	344	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc271917g00007	627	SMART	serkin_6	42	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc271917g00007	627	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Stsc271917g00007	627	SUPERFAMILY	Protein kinase-like (PK-like)	17	319	IPR011009	-
	Stsc271917g00007	627	Gene3D	Phosphorylase Kinase; domain 1	330	420	-	-
	Stsc271917g00007	627	Gene3D	Transferase(Phosphotransferase) domain 1	421	621	-	-
	Stsc271917g00007	627	Gene3D	Transferase(Phosphotransferase) domain 1	117	329	-	-
	Stsc271917g00007	627	Pfam	Protein tyrosine and serine/threonine kinase	346	613	IPR001245	GO:0004672\|GO:0006468
	Stsc271917g00007	627	Pfam	Protein tyrosine and serine/threonine kinase	54	315	IPR001245	GO:0004672\|GO:0006468
	Stsc271917g00007	627	SUPERFAMILY	Protein kinase-like (PK-like)	328	617	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271917g00007	Stsc-Chr271917	37921	40476	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271917g00007	333	618	Receptor kinase-like Gene Family	AT1G25390	55.479	5.28e-98	311

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Stsc271917g00007		PK_Tyr_Ser-Thr	4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271917g00007	-		-	gmx:100801413	832.017