Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271917g00006 ATGAAGTTTATCCCGTTTACTTGGTTTCAATGCTGCACTACAAGAAAGAATCAACCTCAACAGATTTCAAACCACCCTCAACAATTTTCTTCAGATTTTGGCTTCCAATTCCATACATTCTCCTATCAAGAACTTTTAGTAGCCACCAAGCATTTTGCTTCTTCTAGGATACTTGGAAAGGGAAGCTTCGGCATAGTATATCATGGAAAACTTCAAGATGGGAGACAGATTGCAGTCAAATTCTTGCGCGAAAACAAGGACAAGAAAGTCCACCAGTTTGTCAATGAACTTGTAGTCTTAAGCAAATTGAACCATCCAAATCTTGTCCCATTTTATGGCTACTGTCACCATGACCACAAACTCATGCTAGTATTCAAGTTTGTTTCCAATGGAACTCTCGCTGATCATCTTCATGGAAAACTTAAGAAACAAGGCACCTTACTACCCTGGCATACAAGATTGAACATAGCAATTGAAGCTGCAAGTGCATTGGCGTATCTTCATAATTTAGGAATTATTCACCGCGATGTAAAATCCTCCAACATTCTTTTGGATGAAGGCTTATGCGTTAAGGTGGCAGATTTCGGCCTTTCGCGCATGCTTCCTTTGGTTGTTTCAACTTCGAAAGAGGCTGCTACTTTTGCTTCTCATGCCTCAACTGCTCCACAAGGAACAAATGGATATATAGATCCTGATTATTTTCAGTTTCAAAGGGTTTGTGACAAGAGTGATACTTATAGCTTTGGAGTGGTCTTGGCCGAGATTATATCGTCATTGCCAGCGGTGGATAATAATGGGAATAGGTATGAGGTACCATTGCTGTCCCACCTTACCATGAACAAAATCCAAAATGAAGCGTTGCATGAGTTAGTGGATCCATGCCTTGGTTTTGAAACAGAAATTGAGATTAGAGAATCTATAACTGCTGTGGCAGAGTTGGCATTTCAGTGCTTGCAATGTCCTAAGGAACTAAGGCCATCTATGAAGCAGGTCCTAGAGACTCTGCAGGGTATAAAACAGGGAATATGGGGATTTCACCAAATAACATAG 1050 0.4057 MKFIPFTWFQCCTTRKNQPQQISNHPQQFSSDFGFQFHTFSYQELLVATKHFASSRILGKGSFGIVYHGKLQDGRQIAVKFLRENKDKKVHQFVNELVVLSKLNHPNLVPFYGYCHHDHKLMLVFKFVSNGTLADHLHGKLKKQGTLLPWHTRLNIAIEAASALAYLHNLGIIHRDVKSSNILLDEGLCVKVADFGLSRMLPLVVSTSKEAATFASHASTAPQGTNGYIDPDYFQFQRVCDKSDTYSFGVVLAEIISSLPAVDNNGNRYEVPLLSHLTMNKIQNEALHELVDPCLGFETEIEIRESITAVAELAFQCLQCPKELRPSMKQVLETLQGIKQGIWGFHQIT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271917g00006 349 Gene3D Transferase(Phosphotransferase) domain 1 128 342 - -
Stsc271917g00006 349 PIRSF ILK 38 347 - -
Stsc271917g00006 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Stsc271917g00006 349 ProSiteProfiles Protein kinase domain profile. 52 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271917g00006 349 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 341 IPR044652 GO:0004672
Stsc271917g00006 349 Gene3D Phosphorylase Kinase; domain 1 23 127 - -
Stsc271917g00006 349 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Stsc271917g00006 349 SUPERFAMILY Protein kinase-like (PK-like) 28 336 IPR011009 -
Stsc271917g00006 349 SMART serkin_6 52 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271917g00006 349 Pfam Protein kinase domain 54 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271917g00006 Stsc-Chr271917 36430 37572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271917g00006 28 340 Receptor kinase-like Gene Family AT1G25390 52.229 3.11e-102 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc271917g00006 Pkinase 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271917g00006 - - adu:107490705 634.409