Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271916g00013 ATGATGATATGGCCAGTACATGTTCTACTTGTAATCTATGGTTTCCATAACCATGGCTACTTTGTTCCACAAAAAGCCTCAGATTCTAGTTTATCTGATCCTCTACTAGCTCACAAGGTTGAGCATAATCAAGAAACAGAATTAGGCCATGGAAACATTCTTAATAGAATGACATTCTCTTGGATCAATTTGTTACTGAAATTGGGTTACTCAAAGCCACTAGCACTTGAAGACATCCCTTCCCTTGCTTCTGAAGATGAAGCTGAGATTGGTTATCAAAAGTTTGCTCATGAATTGGACTCCCTTTTGAGTGAGAGGAGCAAGAGTGATTCTAGAAACTTGGTTCTTAGGTCGATTGTTCGAGTTTACTTTAAAGAAAACATGTTTATAGCCCTTTGTGCAGTTCTCAGGACAATTTGTGCCGTAGTTTCTCCTTTACTTGTCTATTCTTTTGTGAAATATTCCAATTCCATTGAGGAAGACTTGAAATGGGGACTAACCATAGTGGCATGTTTAGTACTCGCCAAGGTGGTTGAGTCTATGTGCCAGAGGCATTGGTTTTTCAACTCAAGGAGGTCAGGGATGAAAATGAGATCAACTTTAATGGCAGCAGTATATCAGAAGCAGTTGAAGCTTTCAATTCGGGGTAGGAGAAGGCATACAACTGGTGAGATTGTGAATTACATCGCAGTCGATGCATATCGAATGGGAGAGTTTCCATGGTGGTTTCATACAGCCTGGACTTCTGCATTGCAAGTTTTTCTGGCTGTTTGTGTTCTTTTTGGTGTTGTTGGTCTTGGTGCACTTCCTGGTTTAGTCCCTCTTCTCATTTGTGGAATTATCAATGTCCCATTTGCAAAGATCCTACAAAAATGTCGTTCGGAGTCTATGATTGCACAGGATGAGCGTCTGAGATCAACTTCAGAGATTCTAAGTAGCATGAAAATCATAAAGTTACAATCATGGGAGGAAAAGTTCAAGAAACTAGTTGAATCGCTTCGCGCTGAAGAGTTCAAATGCTTGACTAAGGCACAGCTAATGAGAGCTTTTGATGATGAGATAAAAATTGATGATGGTAGAAGAAATGCAAAACTGAGTCCTTGTAACAGTGTTGAGATTATTGCAGGAAACTTCAGCTGGAGTGAGGAATCAATGCATCCAACTCTGAGGGATGTGAATCTAGAGATAAAATGGGGTCAGAAAATAGCAGTTTGTGGTCCAGTTGGAGCTGGAAAAACAGCTCTCTTATATTCAATTCTTGGAGAGATACCAAAAGTTTCAGGAACAGTTAGTGTAGGTGGAACTTTTGCATATGTTTCCCAAACTCCTTGGATCCAAAGCGGTACCATTCGCGATAATATCCTCTATGGAAAGCCTATGGAGAAAACCAGATATGAATATACCATTAAGATATGTGCCTTGGATAAGGATATTGATGGATTTAGCCATGGTGATCTCACAGAAATCGGTGAGAGAGGGATCAACATGAGTGGAGGACAAAAACAAAGGATTCAACTTGCTCGAGCTGTCTATAGTGATGCCGATATCTATCTCCTTGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCTTCCATTCTGTTCAATGATTGTGTAAAGACTGCTTTAAGAAGCAAAACAGTTATTCTAGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATCAAATCCTGGTAATGGAGAGAGGAAAAATAACTCAATCAGGAAGTTATAAAGATCTTTTGATTGCTGGAACAGCCTTTGAACAACTACTGAATGCTCACAGAGATGCAATCACAGGGGTGAAGAAAAATAATGAGAAGGAGAGAGTTCTTGAAAATGTAGTTTCAGTTCATCCGGAGGATTCACATGGTTTGGATCTCGCAAACGCTGGAGGTCAAGCCGACATTTCCTCCAAAGTTGAACTAACACAAGAGGAAGAAAAGGAGATTGGTGATATTGGATGGAAGCCATTCTGTGATTACATTCTATTCCCTAAGAGTTCATGGCTACTTTGCTTTTGCATATTGGCACAATTGGCTTTTGTTGGTCTGCAAGCTGCATCAACTTTTTGGCTTGCTCTAGCCATTGAGATACCAAAAGTAACAAGTAGCATCTTAATTGGGGTTTATGCTGTGATTTCCTTTTTAGCTGTTGTATTTACATATCTAAGGTCTTTTCTTGGTGCACACGTTGGTTTGAAAGCTTCTAAGGCTTTCTTCTCTGCTTTCAATGATGCCATCTTCAGTGCTCCTATGTTGTTCTTTGACTCAACACCTGTTGGGAGGATTCTAACCAGAGCTTCATCAGATTTGAGTATTTTGGATTTCGATATGGCTTTTGCAACCTTCTTTGTAATAGGTGAAATAATTGAACTTTCAACAATGATCGGGATCATCGTTTCAGTCACATGGCAAGTTCTAATTGTTGCCATTCCTGCTCTCGGGGCTTCAAAATATCTTCAGGGCTATTATCAAGCTTCTGCAAGGGAACTTATGAGGATCAATGGAACTACAAAAGCTCCTCTTATGAATTTTACAGCTGAGACATCACTTGGTGTGATCACTATAAGGGCTACCAAGATGATGGACAGATTTTTCAAAAGCTACCTAAAGCTTGTTGACACAGATGCTACACTGTTCTTTCATTCTAATGCTGCCACAGAATGGTTAATTTTAAGGATTGAAGCCTTACAGAATATGACACTCTTCACTGCAGCTTTGTTGCTTGTTTTACTTCCAAAGGGATATGTGGCCCCTGGTCTTGTTGGAGTTTCGCTGTCTTATGCATTTTCATTGACATTGACCCAAGTTTTTCTGACCAAGTGCTTCTGCAACTTATCAAACTATTTGATCTCTCTTGAAAGAATCAAGCAATTTATTAACATACCATCCGAGCCTAGCCCGATTGTGGAGGACAAAAGGCCACCGTCTTCTTGGCCGTCAAGGGGTCGGATTGATCTTCGATCACTTGAGATTAGATACCGTCCAAACGCTCCATTAGTCCTTAAGGGAATATCTTGTACATTTAAAGAAGGGAGTAGAGTGGGAGTGGTAGGAAGAACTGGAAGTGGAAAAACCACCCTTATAAGTGCCTTATTCCGCTTAGTTGAGCCTGCAGGAGGTGATATCCTTATAGATGGGATCAACGTTTGCTCAATTGGGCTGAAAGATTTGAGAATGAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTTTAGGTCTCTACACTGATGATGAAATATGGAAGGCTCTAGAGAAATGTCAGCTTAAGGCAACAATTAGTGTTCTACCAAATCTCTTGGACTCTTCTGTAAGCAATGAAGGTGAAAACTGGAGTGTAGGGCAGCGCCAACTCTTCTGTCTAGGAAGAGTACTTCTTAAGAGGAACAGAATTCTTGTGCTGGATGAAGCTACTGCCTCCATTGATTCTGCCACCGACGTCATCTTACAACGAGTTATCCGACAAGAATTCTCAGAATGCACAGTTATAACAGTTGCTCACAGAGTTCCAACTGTAATAGATAGTGATATGGTCATGGTCCTATCTTATGGGAAACTGATTGAGTATGATGAGCCTTCAAGGCTTATGGAGAGAGACTCTTCATTCTATAAGCTGGTATCAGAATATTGGTCCAACTGTAACAGGAATGTTCTCCACAAAGTTGAGCACTGA 3708 0.4048 MMIWPVHVLLVIYGFHNHGYFVPQKASDSSLSDPLLAHKVEHNQETELGHGNILNRMTFSWINLLLKLGYSKPLALEDIPSLASEDEAEIGYQKFAHELDSLLSERSKSDSRNLVLRSIVRVYFKENMFIALCAVLRTICAVVSPLLVYSFVKYSNSIEEDLKWGLTIVACLVLAKVVESMCQRHWFFNSRRSGMKMRSTLMAAVYQKQLKLSIRGRRRHTTGEIVNYIAVDAYRMGEFPWWFHTAWTSALQVFLAVCVLFGVVGLGALPGLVPLLICGIINVPFAKILQKCRSESMIAQDERLRSTSEILSSMKIIKLQSWEEKFKKLVESLRAEEFKCLTKAQLMRAFDDEIKIDDGRRNAKLSPCNSVEIIAGNFSWSEESMHPTLRDVNLEIKWGQKIAVCGPVGAGKTALLYSILGEIPKVSGTVSVGGTFAYVSQTPWIQSGTIRDNILYGKPMEKTRYEYTIKICALDKDIDGFSHGDLTEIGERGINMSGGQKQRIQLARAVYSDADIYLLDDPFSAVDAHTASILFNDCVKTALRSKTVILVTHQVEFLSEVDQILVMERGKITQSGSYKDLLIAGTAFEQLLNAHRDAITGVKKNNEKERVLENVVSVHPEDSHGLDLANAGGQADISSKVELTQEEEKEIGDIGWKPFCDYILFPKSSWLLCFCILAQLAFVGLQAASTFWLALAIEIPKVTSSILIGVYAVISFLAVVFTYLRSFLGAHVGLKASKAFFSAFNDAIFSAPMLFFDSTPVGRILTRASSDLSILDFDMAFATFFVIGEIIELSTMIGIIVSVTWQVLIVAIPALGASKYLQGYYQASARELMRINGTTKAPLMNFTAETSLGVITIRATKMMDRFFKSYLKLVDTDATLFFHSNAATEWLILRIEALQNMTLFTAALLLVLLPKGYVAPGLVGVSLSYAFSLTLTQVFLTKCFCNLSNYLISLERIKQFINIPSEPSPIVEDKRPPSSWPSRGRIDLRSLEIRYRPNAPLVLKGISCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPAGGDILIDGINVCSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYTDDEIWKALEKCQLKATISVLPNLLDSSVSNEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDVILQRVIRQEFSECTVITVAHRVPTVIDSDMVMVLSYGKLIEYDEPSRLMERDSSFYKLVSEYWSNCNRNVLHKVEH 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271916g00013 1235 SUPERFAMILY ABC transporter transmembrane region 116 349 IPR036640 GO:0005524|GO:0016020
Stsc271916g00013 1235 ProSitePatterns ABC transporters family signature. 496 510 IPR017871 GO:0005524|GO:0016887
Stsc271916g00013 1235 Pfam ABC transporter transmembrane region 676 930 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc271916g00013 1235 Pfam ABC transporter transmembrane region 129 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc271916g00013 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 988 1220 IPR003439 GO:0005524
Stsc271916g00013 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 674 949 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc271916g00013 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1219 IPR027417 -
Stsc271916g00013 1235 Gene3D ABC transporter type 1, transmembrane domain 638 967 IPR036640 GO:0005524|GO:0016020
Stsc271916g00013 1235 Gene3D ABC transporter type 1, transmembrane domain 97 348 IPR036640 GO:0005524|GO:0016020
Stsc271916g00013 1235 FunFam ABC transporter C family member 3 969 1220 - -
Stsc271916g00013 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 129 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc271916g00013 1235 FunFam ABC transporter C family member 5 635 967 - -
Stsc271916g00013 1235 SMART AAA_5 398 571 IPR003593 GO:0016887
Stsc271916g00013 1235 SMART AAA_5 1012 1205 IPR003593 GO:0016887
Stsc271916g00013 1235 SUPERFAMILY ABC transporter transmembrane region 666 969 IPR036640 GO:0005524|GO:0016020
Stsc271916g00013 1235 CDD ABCC_MRP_domain2 984 1204 - -
Stsc271916g00013 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 594 IPR003439 GO:0005524
Stsc271916g00013 1235 FunFam ABC transporter C family member 10 111 354 - -
Stsc271916g00013 1235 CDD ABC_6TM_ABCC_D1 129 350 IPR044746 GO:0140359
Stsc271916g00013 1235 Gene3D - 970 1220 IPR027417 -
Stsc271916g00013 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 593 IPR027417 -
Stsc271916g00013 1235 CDD ABC_6TM_ABCC_D2 670 961 IPR044726 GO:0140359
Stsc271916g00013 1235 CDD ABCC_MRP_domain1 371 571 - -
Stsc271916g00013 1235 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 52 350 - -
Stsc271916g00013 1235 FunFam Multidrug resistance protein associated1 350 614 - -
Stsc271916g00013 1235 Pfam ABC transporter 389 523 IPR003439 GO:0005524
Stsc271916g00013 1235 Pfam ABC transporter 1003 1151 IPR003439 GO:0005524
Stsc271916g00013 1235 Gene3D - 349 618 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271916g00013 Stsc-Chr271916 134439 139699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271916g00013 371 617 Calmodulin-binding Proteins AT2G36910 26.592 4.77e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271916g00013 - - egr:104423032 1509.97