Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271916g00009 ATGATGAGTCGGGAGCAACAGAAGGTGGGAGGGAAGCAAGTCAAAGGCTCCGATGGTGCTGAGAAGGTTATCGTTGCCGTTAAGGCGTCGAAAGAAATTCCAAGGACTGCACTTGTTTGGTCCCTCACTCATGTTGTTCAACCTGGAGATTGCATCACCCTGCTAGTGGTTGTGCCTTCACAAAGTTCAGGCAGAAGATTATGGGGTTTTCCTAGATTTGCTGGTGATTGTGCCAGCATCAGCAAAAAGTATCCACCAGGAACAGTTTCAGAGCAGAAGCATGATATCACTGATTCTTGTTCTCAAATGATCCTTCAGCTCCATGACGTGTATGATCCGAATAAGATAAATGTCAGGATTAAAATTGTTTCTGGATCTCCTTGTGGAGCAGTGGCCGCAGAAGCCAAGAAAGCGCAAGCCAATTGGGTTGTATTAGACAAACAGCTCAAACATGAAGAAAAGAGATGCATGGAAGAGCTACAGTGTAATATTGTGGTCATGAAGCGTTCCCAACCAAAAGTACTGCGCTTGAATTTGATTGGATCAAAAAAGGAAGCTGAAGAGTCACGTCCATTGCCTTCTGAGCACCATGAACTGGCTGAAAATCGAACTCAAAAGAATGCCGATTCATTAAATTCCATTAAGGGGCCATCTGTAACTCCAACTAGCAGCCCGGAGCAAGGGACTCCGTTTACCGCAACAGAAGCTGGAACTTCATCAGTTTCAAGCTCTGATCCTGGAACTTCACCATTCTTTATCTCAGAGACAAATGGTGAGTTGAAGAAAGAGGAGACTATCAAAGAAAATCAAGAACTTGATGATTCAGACACAGAAAGTGAAAGTTTGTCCACATCTTCAGCAAGCTTAAGATTCCAGCCATGGATTACTGAATTGCTTTTACATCAACAATCATCTCAACGAAATGATGAAAGACAGGAAATATCTAATGATATGCCTCAAACATCTACAACCAGAGCCTTGCTAGAAAAGTTCTCAAGGCTCGATAGAGGAGCTGGAAATGAAATTTCAACTTATAGAAATGAGTCAGATTTTAGTGGAAATCTCAGAGAGGCAATATCATTATCTAGAAATACGCCACCTGGTCCACCTCCATTATGTTCAATATGTCAACACAAGGCACCTGTCTTCGGAAAACCTCCAAGATGGTTCAGCTATGCCGAGCTAGAACTTGCCACTGGTGGATTCTCTGAGGCCAACTTCCTGGCTGAGGGGGGATTCGGATCTGTTCATAGAGGGATTCTACCAGATGGACAAGTCATTGCTGTCAAGCAGCATAAATTGGCTAGTTCTCAGGGTGACCTTGAGTTTTGCTCAGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGGTTCTGTATAGAGGATAAGAGAAGGCTACTAGTTTATGAGTACATATGCAATGGATCATTGGATTCACATTTATATGAATGGGCTGCACGGCAAAAGATTGCCATTGGAGCTGCTCGTGGGTTACGATATCTTCATGAAGAGTGCAGAGTGGGATGCATTATCCACCGTGATATGCGGCCTAATAACATTCTCATAACTCATGATTTTGAACCACTGGTTGGTGATTTTGGATTGGCGAGGTGGCAACCGGATGGAGACACGGGTGTGGAAACCCGAGTAATTGGAACTTTCGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATAACTGAAAAAGCTGATGTTTATTCATTCGGAGTGGTATTAGTAGAGCTTGTTACAGGGAGAAAAGCCGTGGATCTCACTCGGCCTAAGGGACAGCAGTGTCTTACTGAGTGGGCACGACCTCTGTTGGAAGAATATGCCATCGAGGAACTGATTGATCCAAGGCTGGGGAACCGATACATAGAAAATGAGGTCTATTGCATGTTGCACGCTGCATCATTATGCATTCGGCGAGATCCTCATTCTCGACCACGCATGTCACAGGTTCTTCGCATTCTAGACGGTGACATGGTCATGGACACAAGTTACATTTCAACTCCGAGTTACGATGTGGGAAACCGGAGTGGCCGACTCTGGTCCGAGCCGCTGCAGAGGCAGCATCATTACAGTGGCCCGCTGTTAGAAGAGTCGCTTGAATCATTCAGTGGGAAGCTATCTCTTGACAAATACAGGCCTCCTTATTGGGATAGGGACAACAAAGCAAGAAGGACTTCATGTGAAGATGACATTTAA 2229 0.4482 MMSREQQKVGGKQVKGSDGAEKVIVAVKASKEIPRTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASISKKYPPGTVSEQKHDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGSKKEAEESRPLPSEHHELAENRTQKNADSLNSIKGPSVTPTSSPEQGTPFTATEAGTSSVSSSDPGTSPFFISETNGELKKEETIKENQELDDSDTESESLSTSSASLRFQPWITELLLHQQSSQRNDERQEISNDMPQTSTTRALLEKFSRLDRGAGNEISTYRNESDFSGNLREAISLSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSEANFLAEGGFGSVHRGILPDGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYEWAARQKIAIGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIEELIDPRLGNRYIENEVYCMLHAASLCIRRDPHSRPRMSQVLRILDGDMVMDTSYISTPSYDVGNRSGRLWSEPLQRQHHYSGPLLEESLESFSGKLSLDKYRPPYWDRDNKARRTSCEDDI 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271916g00009 742 MobiDBLite consensus disorder prediction 205 255 - -
Stsc271916g00009 742 CDD STKc_IRAK 408 667 - -
Stsc271916g00009 742 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 374 477 - -
Stsc271916g00009 742 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 478 674 - -
Stsc271916g00009 742 Gene3D Transferase(Phosphotransferase) domain 1 478 677 - -
Stsc271916g00009 742 PANTHER OS01G0750732 PROTEIN 243 673 - -
Stsc271916g00009 742 MobiDBLite consensus disorder prediction 303 327 - -
Stsc271916g00009 742 ProSiteProfiles Protein kinase domain profile. 402 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271916g00009 742 MobiDBLite consensus disorder prediction 184 204 - -
Stsc271916g00009 742 SUPERFAMILY Protein kinase-like (PK-like) 386 677 IPR011009 -
Stsc271916g00009 742 Gene3D Phosphorylase Kinase; domain 1 374 477 - -
Stsc271916g00009 742 ProSitePatterns Tyrosine protein kinases specific active-site signature. 516 528 IPR008266 GO:0004672|GO:0006468
Stsc271916g00009 742 Pfam Protein kinase domain 406 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271916g00009 742 MobiDBLite consensus disorder prediction 184 287 - -
Stsc271916g00009 742 FunFam Dual-specific kinase DSK1-like 14 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271916g00009 Stsc-Chr271916 50904 55088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271916g00009 389 666 Trihelix Transcription Factor Family AT5G38560 52.921 7.01e-100 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc271916g00009 Pkinase 6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271916g00009 - - gmx:100816340 1306.97