Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271916g00006 ATGGAAATTATAGATGATGAAGTGCCTAAGATCCTTCATGGAACCATTGAAGCTACTATCTTCAATGCCTCACCTCCTTCTTCATCTCCTTCTTCATTTCCCTTCAAGTGTCTATGTTCAAATGCAAAAAAGGCAGCTTATGTGACAATCAAGATAGACAAGGAGAAGGTTGCAAAAACAAATGAAGACATTGATCGTGTTTGGAACCAAACCTTCAAGATCCAATGTGCATACCCAATTGATTCAACAATCACAATAACACTCAAAACAAAAACCTCCACATTAGGAAAATACCACATTAAATGCCACAAGCTTCTAGAAGAAGGAAGCTTGATCAATGGATTCATCCCTCTAATAACGGAAGATAATGGAAAACCAAACCCAAAGCTCAAATTGAAGTTCCAATTGTGGTTCAATTCAGCTGAAGAATTATTGGAACCAATTAGTTGGGCAAAGATAATGAGGTTTGGGAATAATTCTCAAGGGATGAAAGATTCTACTACATTTCCACAAAGGTCTAATTGTTATGTGAAACTATATCATGATGCTCATCATTGTTCTACTTTTCAACCAACCAATAATGGTTTATTATGTGAAGCTCCAAGGAAGCTATGGGAGGATGTGTATAAAGCTATTGAGGGTGCAAAGCATATAATTTATATTGCAGCCTGGTCCCTCAATCCCAACCTTGTTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCAAAAGGAATAAAGCTTGGTGATTTATTGAAGAAGAAAGCAGAGGAAGGTGTTGCTGTGAGGATTATGCTTTGGGATGATGAAGCATCTTTGCCCTTTATTAAGAAGAACAAAGGTGTAACAAACAATAATACACAACAACATGATCATGGTCATGGTGATGATGATGATGCTTTTGCTTACTTCAAGAAAACAAGAGTAATATGCACAAAGTGTCCTAGGTTGCACCACAAGTTCCCAACACTCTTTTCTCACCACCAAAAGACTATAACATTGGACACAAAAAAATCACCAAATTCTAATTATAATGATGATAATGATGGTGAAGATGATGAGAAGGAACTAATGAGCTTTTTGGGAGGAATAGATTTGTGTGAAGGAAGATATGACACTGAGCAACATTCATTGTTTCACACACTCATTAGGGAATCACATTGTTATGATTTTTACCAACCAAACATTGGAGGAGCTAGTCTTAACAAAGGAGGGCCAAGAACACCTTGGCATGATGCTCATGCTTGTGTTGTTGGTGAGGCTGCTTGGGATGTTTTGACCAACTTTGAGCAAAGGTGGAGAAAGCAATGTGATCCTTCTTTTCTAGTTCCTACTAGCACCATAGCAAATGTTGTTGGGCCTAGGAATAGCACAAGTTCTAACACTTCCATACACAAGGATTGGAATTGGAAAGTTCAAGTATACAGATCAATTGATGATGTGTCTGCTAGCTTCCAAAGCCAATCATTTAGAGAGTTACATGTAGAAAGGAGCATCCATGAGGCTTATGTTGAAGCAATTAGAAGTGCTGAGAAGTTCATATACATTGAGAGTGAATATTTCATTGGAGGGTGCCAATTATGGGACAAAGATAGGGATAGTGGATGCACAAACCTAATCCCAATTGAGATTGCACTGAAAATTGTTAGCAAGATCAAAGCAAAAGAGAGATTTGCAGTGTACATAGTGATACCAATGTGGCCAGAAGGAGTGCCTAAGAGTGAAGCAGTTCAAGATATATTGCATTGGACTAGAGAAACTATGGCTATGATGTATAGGCTAATTGGAGAAGCAATGAAAGAGAATGGGGAAAATAGTGGTCACCCTAAAGATTATTTGAATTTCTTTTGCCTTGCAAATAGGGAAGAAAAGGGGAGTGGGGAGTATATTCCACAGCAGGCTCCTCATCCTGGAACACTGTATGGGAATGCACAGATTAATAGGAGGTTCATGGTTTATGTTCACTCCAAGTTCATGATAGTGGACGACCAATACATACTAATAGGATCAGCAAATGTGAACCAAAGATCCATGGATGGAGAAAGGGACACTGAGATTGCCATTGGATGCTACCAATTATCCCAAGATAATAATAACGAAGGTAACAACCAAATGAGCCATGGTGAAATTCATGCATTTAGAATGTCACTATGGTACGAACACACTGCTAGCAGTGCCAATTATGACTTGTTCTTAGAGCCACAAAGCTTGGAATGTGTCGACATGATGCATTCAATTGGTGACAAAATGTGGGAAATTTACATCGATGATGAAGTTGTGGACATGGAAGGTGTGCACCTTGTGACTTACCCAATAAGTGTAACACAAGATGGGTGTGTGAAGGATCTTCCTAATGGACTTCGTTTTCCTGATACAAATTCCAGAGTTAAGGGAAAGAGATCTAACACTTTGCCCCCCAACTTCACAAATTAG 2433 0.388 MEIIDDEVPKILHGTIEATIFNASPPSSSPSSFPFKCLCSNAKKAAYVTIKIDKEKVAKTNEDIDRVWNQTFKIQCAYPIDSTITITLKTKTSTLGKYHIKCHKLLEEGSLINGFIPLITEDNGKPNPKLKLKFQLWFNSAEELLEPISWAKIMRFGNNSQGMKDSTTFPQRSNCYVKLYHDAHHCSTFQPTNNGLLCEAPRKLWEDVYKAIEGAKHIIYIAAWSLNPNLVLVRDPQTEIPHAKGIKLGDLLKKKAEEGVAVRIMLWDDEASLPFIKKNKGVTNNNTQQHDHGHGDDDDAFAYFKKTRVICTKCPRLHHKFPTLFSHHQKTITLDTKKSPNSNYNDDNDGEDDEKELMSFLGGIDLCEGRYDTEQHSLFHTLIRESHCYDFYQPNIGGASLNKGGPRTPWHDAHACVVGEAAWDVLTNFEQRWRKQCDPSFLVPTSTIANVVGPRNSTSSNTSIHKDWNWKVQVYRSIDDVSASFQSQSFRELHVERSIHEAYVEAIRSAEKFIYIESEYFIGGCQLWDKDRDSGCTNLIPIEIALKIVSKIKAKERFAVYIVIPMWPEGVPKSEAVQDILHWTRETMAMMYRLIGEAMKENGENSGHPKDYLNFFCLANREEKGSGEYIPQQAPHPGTLYGNAQINRRFMVYVHSKFMIVDDQYILIGSANVNQRSMDGERDTEIAIGCYQLSQDNNNEGNNQMSHGEIHAFRMSLWYEHTASSANYDLFLEPQSLECVDMMHSIGDKMWEIYIDDEVVDMEGVHLVTYPISVTQDGCVKDLPNGLRFPDTNSRVKGKRSNTLPPNFTN 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271916g00006 810 Pfam Phospholipase D C terminal 729 799 IPR024632 -
Stsc271916g00006 810 PANTHER PHOSPHOLIPASE D 11 795 IPR015679 -
Stsc271916g00006 810 SMART pld_4 323 370 IPR001736 GO:0003824
Stsc271916g00006 810 SMART pld_4 650 677 IPR001736 GO:0003824
Stsc271916g00006 810 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 135 IPR035892 -
Stsc271916g00006 810 SUPERFAMILY Phospholipase D/nuclease 168 441 - -
Stsc271916g00006 810 PIRSF PLD_plant 5 810 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc271916g00006 810 Pfam PLD-like domain 642 688 IPR025202 -
Stsc271916g00006 810 Pfam C2 domain 44 117 IPR000008 -
Stsc271916g00006 810 Gene3D Endonuclease Chain A 182 464 - -
Stsc271916g00006 810 SUPERFAMILY Phospholipase D/nuclease 470 729 - -
Stsc271916g00006 810 MobiDBLite consensus disorder prediction 796 810 - -
Stsc271916g00006 810 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 650 677 IPR001736 GO:0003824
Stsc271916g00006 810 MobiDBLite consensus disorder prediction 790 810 - -
Stsc271916g00006 810 Gene3D Endonuclease Chain A 491 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271916g00006 Stsc-Chr271916 30665 35273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271916g00006 36 809 Phospholipase D Gene Family (Wang group) AT1G55180 58.515 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271916g00006 K01115 - gmx:100812642 1097.03