Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271915g00021 ATGTACAAATGCTTAAATTATGAAATAGTGGTGGTAAGAAATTTGGCTTATGATGCTAGGTGCTTCCATGCTAGTCCTGAACTCTGGGCAAGAAGAGGTGGTGAACCATTTGGGTTGAAAACCCCAAAGAAGGAGAAGTACATAAGAAGGGAAGGTAGAAACCAGCCACCTGTTGAAGCTCGATATGTCCCTTGTAATGTCAAAGCACCCAAATCTAATTCTGATAAAACAGTAGAAATATTTGAAGGCATGACCCTTGATGAACTGGCAAAGCGTACTGGGAAATCAGTATCTTCTTTGCAGGATATCCTTACAAATGTTGGTGAAAAGTGTGAATCAGAGTTTGAGCCTCTCAGCATGGATATTGTAGAGCTTGCTGCAATGGAGGTTGGGGTCAATGTTAAGAGGTTACATTTGGCTGAGGGTACTGAAATCATACCACGTCCTCCGGTTGTAACTGTGATAGGCCATGTTGATCATGGTAAAACGTCTCTTCTTGATGCCTTGCGTCAAACATCGGTGGCAGCGAGAGAGGCTGGTGGCATAACTCAGCATCTAGGTGCCTTTGTGGTGGTGATGCCATCTGGAGCGGCAATCACATTTCTTGATACCCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGCGCAGCAGTCACAGATATAGTAGTGCTAGTTGTCGCTGCAGATGATGGAGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAAAGTACCAATTGTAGTGGCAATTAATAAATGTGATAAACCAGGTGCGAATCCTGAGAAAGTGAAACTGCAACTTGCTTCGGAGGGCTTACTGCTGGAGGAGATGGGTGGTGATGTTCAGGCCATTGAAGTTTCAGCAATTCAAAAAACCGGATTGGATAACTTAGAGGAAGCTTTACTTCTACAGGCTGAAATGATGGATCTGAAGGCACCAATTGATGGGCCTGCTCATGCTTATGTGGTAGAAGCAAGGCTTGACAAAGGACGTGGTCCATTGATAACTACCATCGTAAAGGCACGAACCTTAACTTGTGGTCAGCATGTGGTTATAGGCTCGGAGTGGGGAAGAATAAGGGCTATTAAAGACACGGTGGGAAGGTTAACTGAACGAGCAACTCCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGACAAGGAAGTCCGAGGAGAATAGACTTAGGAGGAAGTTGAATGAGGACATTCCATCTACTTTGGAATCATCGGAGGAGGTTCCACAGAGGGTTGAGATGCCAGTAATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTTACAGATGCATTAAGAACGTTAAATAGTTCTCAGGTTCTTGTGAATGTTGTTCATGTTGGTGTTGGACCTATTTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCATGCATAGTTGGATTCAATATCAAGACTCCACCTGTTGCTCTTAGTCAGGCAGCAACTCGCGCCAATATCAAGGTGATTCTCCACCGTGTTATTTACCACCTTTTGGAGGACATAGGAAATTTGATAATAGAGAAGGCTCCGGGTACTTTCGAGACCCAGGTTGCTGGTAAGGCAGAGGTGCTGAACATCTTTGAAGTGAAAGGGAGCAAAACAAAGGGACCTGATGTTAAGATAGCCGGGTGTCGGGTCGTAGAAGGTTTTGTAGCGAGGACAGGAACCATGAGGCTTCTGAGGACTGGAGAAGTAGTGTTTGAAGGACTTTGTGCATCTCTTAAGAGGGAGAAGCAGGATGTGGATAGTGTGAAGAAGGGTAATGAGTGTGGATTAGTGATCAATGATTGGTATGATTTCAAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTTGTGAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGTGGTTATGAGAGTTTAA 2001 0.4478 MYKCLNYEIVVVRNLAYDARCFHASPELWARRGGEPFGLKTPKKEKYIRREGRNQPPVEARYVPCNVKAPKSNSDKTVEIFEGMTLDELAKRTGKSVSSLQDILTNVGEKCESEFEPLSMDIVELAAMEVGVNVKRLHLAEGTEIIPRPPVVTVIGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGAAITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAAKVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDVQAIEVSAIQKTGLDNLEEALLLQAEMMDLKAPIDGPAHAYVVEARLDKGRGPLITTIVKARTLTCGQHVVIGSEWGRIRAIKDTVGRLTERATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRTRKSEENRLRRKLNEDIPSTLESSEEVPQRVEMPVIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACGACIVGFNIKTPPVALSQAATRANIKVILHRVIYHLLEDIGNLIIEKAPGTFETQVAGKAEVLNIFEVKGSKTKGPDVKIAGCRVVEGFVARTGTMRLLRTGEVVFEGLCASLKREKQDVDSVKKGNECGLVINDWYDFKIGDVIQCLEQVVRKPKFIKSESVVMRV 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271915g00021 666 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 66 659 IPR015760 -
Stsc271915g00021 666 SUPERFAMILY Translation proteins 552 653 IPR009000 -
Stsc271915g00021 666 NCBIfam translation initiation factor IF-2 75 651 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc271915g00021 666 Gene3D - 444 549 IPR036925 -
Stsc271915g00021 666 FunFam Translation initiation factor IF-2 144 319 - -
Stsc271915g00021 666 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 444 557 IPR036925 -
Stsc271915g00021 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 338 IPR027417 -
Stsc271915g00021 666 Gene3D Translation factors 551 653 - -
Stsc271915g00021 666 Pfam Elongation factor Tu GTP binding domain 152 308 IPR000795 GO:0003924|GO:0005525
Stsc271915g00021 666 CDD IF2_eIF5B 150 314 - -
Stsc271915g00021 666 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 147 317 IPR000795 GO:0003924|GO:0005525
Stsc271915g00021 666 Pfam Translation-initiation factor 2 435 539 IPR023115 -
Stsc271915g00021 666 Gene3D - 144 319 IPR027417 -
Stsc271915g00021 666 SUPERFAMILY Translation proteins 321 403 IPR009000 -
Stsc271915g00021 666 NCBIfam small GTP-binding protein domain 150 301 IPR005225 GO:0005525
Stsc271915g00021 666 CDD IF2_mtIF2_II 323 416 IPR044145 -
Stsc271915g00021 666 FunFam Translation initiation factor IF-2 552 655 - -
Stsc271915g00021 666 Hamap Translation initiation factor IF-2 [infB]. 3 654 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc271915g00021 666 Gene3D Translation factors 320 434 - -
Stsc271915g00021 666 CDD mtIF2_IVc 557 646 - -
Stsc271915g00021 666 FunFam Translation initiation factor IF-2 444 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271915g00021 Stsc-Chr271915 143607 147552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271915g00021 141 632 Eukaryotic Initiation Factors Gene Family AT1G76810 26.270 3.06e-25 110