Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271914g00032 ATGGCTTCACAATCGCCACCTTCTCCCTTGGACGACGCCCTTCCCGATGTCAAAGACTATGTCTGGGAAAAAGAATCAGATAGCTTGCCCTGGGACACACTTCGCCATCTTTACGAGCTCGTGCAGAGTGGCAATCAAGCATTTCGAGACAACAGAATGGAAGAGGCTATCAGCTTTTATTCACGAGCCAATAACATTAAATCTGCTGATCCAATCATCCTCACCAATCGCTCTGCTGCTTATATTAGGATCAGTCAATATTTAAAGCATAGAACTCCATCGGCTTCAGAACATAGACCATTGAGTGGGCTTGATCCTACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTCTTGACCTTCAAAGTAATTCAGTAAATCCGTACATTTTAAAGGTCAATGCATTATTTCTGTTGGAGAAATATGAGAAAGCCCGGGAAGTTATTCTTTCAGGCCTTCAAGTTGATCCATTTAGCAATCCTCTTCAAGCTTCTCTTCGGAATTTGGAAAGGCTGTCATCTAGTTCAACAACGATAAATAGACATGCACAACCAGAGCGAAATGATGAGTTTGATTGCACTCTCTGCCTGAAGTTGCTATTCGAACCTGTTACAACCCCTTGTGGTCATTCATTTTGCCGTCCATGTCTATTTCAGTCAATGGATTCTGGGAACAGATGCCCTCTGTGCAGAACAGTTCTGTTTATTAGTCCAAGAACATGTTCAATCAGTGTGACATTGAAGAACATAATAGAGAAGAACTTCCCTGAGGAGTATGCAGAACGGAAGCAAGAGCATGACAGTTTAATCAACCCTGGTGTAGATTTGCTGCCCCTCTTTGTTATGGACGTTGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGATTGATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATCACTGATTCTTCAACAGGTTCCTTAGCTGAGTATGGTTGTGAAGTGGAAATCACTGAGTGTGAGCCACTACCAGATGGTCGTTTCTATATAGAGATTGAAAGTCGAAGGAGATTTCGCATCATCCGTTCATGGGATCAGGATGGGTATCGTGTTGCTCAGGTTGAATGGGTTCAGGATATTATGCCAGCAGAAGGGACAAAAGAAAGAGAGATTTTACAGGAATTGACATGCAATGCAGCAGAAAATGCTCGATCGTGGATAAGAAGAGCCAGAGAAGCAACAAGACTAGATCAAAGAAGGATTGAGAGACTCTTGAATGTTGAAGCAATGATGCCATCGACACAAGACCCAGAGCGTTTCAGTTTCTGGCTGGCTACCTTATCAAATAGGAGGCCTTCAGACAGATTGGATCTCCTTCGGATAAGAGATACCACGGAGAGGATTAGAAGAGGCCTTATATTTCTGAAAGCAGAGGAACAAGGCTGCAGAATTCAATAA 1458 0.428 MASQSPPSPLDDALPDVKDYVWEKESDSLPWDTLRHLYELVQSGNQAFRDNRMEEAISFYSRANNIKSADPIILTNRSAAYIRISQYLKHRTPSASEHRPLSGLDPTTLAELGLKDAEKLLDLQSNSVNPYILKVNALFLLEKYEKAREVILSGLQVDPFSNPLQASLRNLERLSSSSTTINRHAQPERNDEFDCTLCLKLLFEPVTTPCGHSFCRPCLFQSMDSGNRCPLCRTVLFISPRTCSISVTLKNIIEKNFPEEYAERKQEHDSLINPGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVITDSSTGSLAEYGCEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAQVEWVQDIMPAEGTKEREILQELTCNAAENARSWIRRAREATRLDQRRIERLLNVEAMMPSTQDPERFSFWLATLSNRRPSDRLDLLRIRDTTERIRRGLIFLKAEEQGCRIQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271914g00032 485 SMART ring_2 195 232 IPR001841 -
Stsc271914g00032 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 273 IPR013083 -
Stsc271914g00032 485 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 476 IPR003111 -
Stsc271914g00032 485 SUPERFAMILY PUA domain-like 279 475 IPR015947 -
Stsc271914g00032 485 SMART lon_5 278 477 IPR003111 -
Stsc271914g00032 485 Gene3D - 277 379 IPR046336 -
Stsc271914g00032 485 SUPERFAMILY TPR-like 38 166 IPR011990 GO:0005515
Stsc271914g00032 485 Gene3D - 414 477 - -
Stsc271914g00032 485 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Stsc271914g00032 485 SUPERFAMILY RING/U-box 189 258 - -
Stsc271914g00032 485 ProSiteProfiles Lon N-terminal domain profile. 276 477 IPR003111 -
Stsc271914g00032 485 Gene3D Tetratricopeptide repeat domain 36 173 IPR011990 GO:0005515
Stsc271914g00032 485 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Stsc271914g00032 485 PANTHER RING FINGER PROTEIN 127 28 478 - -
Stsc271914g00032 485 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Stsc271914g00032 485 CDD RING-HC_LONFs_rpt2 192 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271914g00032 Stsc-Chr271914 137465 143300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271914g00032 186 236 C3H Transcription Factor Family AT1G74990 37.037 2.67e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271914g00032 - - lja:Lj0g3v0312049.1 798.505